RNA–Protein interactions for RNA: ENST00000325110.10

HMGCS1-201, Transcript of 3-hydroxy-3-methylglutaryl-CoA synthase 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGCS1, Length 3,506 nt, Biotype protein coding, Subcellular localisation Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGCS1-201ENST00000325110 BPIFB1Q8TDL5 484 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 MTERF1Q99551 399 aaKnown RBP12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 C8orf4Q9NR00 106 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 DLGAP4Q9Y2H0 992 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 PCDHB14Q9Y5E9 798 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 H0YAE9 185 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 SH3BP5O60239 455 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 NDUFS2O75306 463 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 RECQL5O94762 991 aaPredicted RBP12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 PFKLP17858 780 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 CRHBPP24387 322 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 CLCN7P51798 805 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 ATN1P54259 1190 aaPredicted RBP12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 VBP1P61758 197 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 GRIK2Q13002 908 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 SPCS2Q15005 226 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 TXNDC8Q6A555 127 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 AHSA2Q719I0 299 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 GOLM1Q8NBJ4 401 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 SPPL2AQ8TCT8 520 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 UPF1Q92900 1129 aaKnown RBP eCLIP12.61□□□□□ -0.392e-31■■□□□ 14.5
HMGCS1-201ENST00000325110 DPH2Q9BQC3 489 aaPredicted RBP12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 AMBRA1Q9C0C7 1298 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 PRDM8Q9NQV8 689 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 FAIMQ9NVQ4 179 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 PDP1Q9P0J1 537 aaPredicted RBP12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 ZNF451Q9Y4E5 1061 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 PCDHB1Q9Y5F3 818 aa12.61□□□□□ -0.39
HMGCS1-201ENST00000325110 ZNF236Q9UL36 1845 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 ZNF840PA6NDX5 716 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 ADAMTS4O75173 837 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 CLPXO76031 633 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 CLDN9O95484 217 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 TACR1P25103 407 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 PBLDP30039 288 aaPredicted RBP12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 OPRL1P41146 370 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 TUFMP49411 452 aaKnown RBP12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 CYP4F2P78329 520 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 RAPSNQ13702 412 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 SYT16Q17RD7 645 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 TMEM236Q5W0B7 351 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 RETSATQ6NUM9 610 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 VTCN1Q7Z7D3 282 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 RBM23Q86U06 439 aaKnown RBP12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 SCLYQ96I15 445 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 SLC6A13Q9NSD5 602 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 SH3BP4Q9P0V3 963 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 LAMA2P24043 3122 aaKnown RBP12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 DYTNA2CJ06 578 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 MANBAO00462 879 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 COX7A2P14406 83 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 PAX3P23760 479 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 DCTP40126 519 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 IDH2P48735 452 aaKnown RBP12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 SKIV2LQ15477 1246 aaKnown RBP12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 RGMBQ6NW40 437 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 TTC30BQ8N4P2 665 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 CHDHQ8NE62 594 aaPredicted RBP12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 REXO5Q96IC2 774 aaKnown RBP12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 SLC52A3Q9NQ40 469 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 POLE4Q9NR33 117 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 HEBP1Q9NRV9 189 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 PCDH10Q9P2E7 1040 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 ERVK-18Q9QC07 812 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 GMEB1Q9Y692 573 aa12.6□□□□□ -0.39
HMGCS1-201ENST00000325110 SLC1A7O00341 560 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 RPLP2P05387 115 aaKnown RBP12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 PRR35P0CG20 571 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 HSMCR30P0CW71 290 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 TMED10P49755 219 aaKnown RBP12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 NFATC2Q13469 925 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 SMN1Q16637 294 aaKnown RBP12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 MOGQ16653 247 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 ARTNQ5T4W7 220 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 CERS6Q6ZMG9 384 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 APCDD1Q8J025 514 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 ZNF548Q8NEK5 533 aaPredicted RBP12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 ELMO1Q92556 727 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 DACH2Q96NX9 599 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 CD244Q9BZW8 370 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 ZDHHC6Q9H6R6 413 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 TMEM161AQ9NX61 479 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 SLC22A14Q9Y267 594 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 BCAS1O75363 584 aaPredicted RBP12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 PDYNP01213 254 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 IL6P05231 212 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 GJA1P17302 382 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 JAK1P23458 1154 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 CA5AP35218 305 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 ZFP36L2P47974 494 aaKnown RBP12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 IRF8Q02556 426 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 DNASE1L3Q13609 305 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 CTU2Q2VPK5 515 aaKnown RBP12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 TMEM179BQ7Z7N9 219 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 OR13F1Q8NGS4 319 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 OR52J3Q8NH60 311 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 COPS8Q99627 209 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 IL26Q9NPH9 171 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 SLC25A37Q9NYZ2 338 aa12.59□□□□□ -0.39
HMGCS1-201ENST00000325110 GPRC5BQ9NZH0 403 aa12.59□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 56.7 ms