RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 HMBOX1Q6NT76 420 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 ASRGL1Q7L266 308 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 CHST15Q7LFX5 561 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 SLAIN1Q8ND83 568 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 HMCESQ96FZ2 354 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 TMEM246Q9BRR3 403 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 AHDC1Q5TGY3 1603 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 MAGEB17A8MXT2 336 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 H7C2Y5 167 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 AKAP8O43823 692 aaKnown RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 ZNF432O94892 652 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 NUDT14O95848 222 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 CHRM5P08912 532 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 IL7RP16871 459 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 IRF9Q00978 393 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 CSTF1Q05048 431 aaKnown RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 ABRQ12979 859 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 ATP13A5Q4VNC0 1218 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 TXNRD3NBQ6F5E7 133 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 CERS6Q6ZMG9 384 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 UBE2R2Q712K3 238 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 FAM98AQ8NCA5 519 aaKnown RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 SLC38A4Q969I6 547 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 AARSD1Q9BTE6 412 aaKnown RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 BRD9Q9H8M2 597 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 FBXO10Q9UK96 956 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 ADAMTS6Q9UKP5 1117 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 STYXL1Q9Y6J8 313 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 LAMB4A4D0S4 1761 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 TCRBV7S3A2A0A539 114 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 SLC25A14O95258 325 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 AP1S2P56377 157 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 PRKCZQ05513 592 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 TSTD2Q5T7W7 516 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 BEND5Q7L4P6 421 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 OR7D4Q8NG98 312 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 ING5Q8WYH8 240 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 BCL2L14Q9BZR8 327 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 POLR3BQ9NW08 1133 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 RNF6Q9Y252 685 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 SPIN1Q9Y657 262 aaPredicted RBP11.29□□□□□ -0.6
VPS39-201ENST00000318006 PKD1L3Q7Z443 1732 aa11.29□□□□□ -0.6
VPS39-201ENST00000318006 PTPRJQ12913 1337 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 UNCXA6NJT0 531 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 GRM6O15303 877 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 GADD45GO95257 159 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 CCNDBP1O95273 360 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 MYBPC1Q00872 1141 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 IL10RBQ08334 325 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 GTF2H2Q13888 395 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ZBTB6Q15916 424 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ZNF181Q2M3W8 571 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 SYPL2Q5VXT5 272 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 GTF2H2CQ6P1K8 395 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ANKRD46Q86W74 232 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 RAD51AP1Q96B01 352 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 SLC39A3Q9BRY0 314 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 CCDC106Q9BWC9 280 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 NEDD8-MDP1E9PL57 170 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 TLL1O43897 1013 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ERN1O75460 977 aaKnown RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 ERAL1O75616 437 aaKnown RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 IMPDH1P20839 514 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ARHGDIBP52566 201 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 MPP2Q14168 576 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ZNF234Q14588 700 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ZNHIT3Q15649 155 aaPredicted RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 MEP1AQ16819 746 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 BTBD16Q32M84 506 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 LDB1Q86U70 411 aaPredicted RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 DBF4BQ8NFT6 615 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 SCAMP5Q8TAC9 235 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 HDAC2Q92769 488 aaKnown RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 TIFAQ96CG3 184 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 PIWIL1Q96J94 861 aaKnown RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 TEPSINQ96N21 525 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 LMAN2LQ9H0V9 348 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 RNF39Q9H2S5 420 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 RPF2Q9H7B2 306 aaKnown RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 CNTN3Q9P232 1028 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 EVLQ9UI08 416 aaPredicted RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 GLYATL1P3A0A0U1RQE8 302 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ZSCAN5BA6NJL1 495 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 XPNPEP2O43895 674 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 FAM163BP0C2L3 166 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 ELFN1P0C7U0 828 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 CSTF2P33240 577 aaKnown RBP eCLIP11.28□□□□□ -0.6
VPS39-201ENST00000318006 ARFIP1P53367 373 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 SPATS1Q496A3 300 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 MBLAC2Q68D91 279 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 DPAGT1Q9H3H5 408 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 SGK2Q9HBY8 427 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 C1orf109Q9NX04 203 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 GTF2IRD1Q9UHL9 959 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 PCDHGB3Q9Y5G1 929 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 BAZ2AQ9UIF9 1905 aaKnown RBP11.28□□□□□ -0.6
VPS39-201ENST00000318006 FUOMA2VDF0 154 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 H0YJX3 145 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 IRAK2O43187 625 aa11.28□□□□□ -0.6
VPS39-201ENST00000318006 KERAO60938 352 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms