RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 ABHD10Q9NUJ1 306 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 DHCR7Q9UBM7 475 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 ENTPD4Q9Y227 616 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 ASF1AQ9Y294 204 aa14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 SNRNP200O75643 2136 aaKnown RBP14.24□□□□□ -0.13
CCDC88B-201ENST00000301897 OTOGQ6ZRI0 2925 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 F8W8V4 182 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 ALBP02768 609 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 FTH1P02794 183 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 UMODP07911 640 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 EDN3P14138 238 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 PSMB4P28070 264 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 TMPRSS15P98073 1019 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 MSLNQ13421 630 aaPredicted RBP14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 ZIC1Q15915 447 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 DEFB110Q30KQ9 67 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 ANKRD20A2Q5SQ80 823 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 ANKRD20A1Q5TYW2 823 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 ANKRD20A3Q5VUR7 823 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 IGFL2Q6UWQ7 119 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 TAS2R42Q7RTR8 314 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 TRIM73Q86UV7 250 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 KCNMB4Q86W47 210 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 DNAJC22Q8N4W6 341 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 OR5AR1Q8NGP9 310 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 OR5K2Q8NHB8 316 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 TBL1YQ9BQ87 522 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 EPS8L2Q9H6S3 715 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 FBXL4Q9UKA2 621 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 NXT1Q9UKK6 140 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 NOVA2Q9UNW9 492 aaKnown RBP14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 EFR3BQ9Y2G0 817 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 NTNG1Q9Y2I2 539 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 C2CD3Q4AC94 2353 aa14.23□□□□□ -0.13
CCDC88B-201ENST00000301897 A0A1B0GX78 115 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 LRRTM2O43300 516 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 AP2A1O95782 977 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 ITGAXP20702 1163 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 CTNNA2P26232 953 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 NSG1P42857 185 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 CACNG1Q06432 222 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 ZNF169Q14929 603 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 YOD1Q5VVQ6 348 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 DENND5AQ6IQ26 1287 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 CLDN19Q8N6F1 224 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 DNAJB14Q8TBM8 379 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 FAR1Q8WVX9 515 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 DNAJC1Q96KC8 554 aaKnown RBP14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 SPATA13Q96N96 652 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 ALS2CR12Q96Q35 445 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 HEMGNQ9BXL5 484 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 LUC7LQ9NQ29 371 aaKnown RBP14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 NLE1Q9NVX2 485 aaPredicted RBP14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 CDC23Q9UJX2 597 aa14.22□□□□□ -0.13
CCDC88B-201ENST00000301897 A0A1B0GUH1 482 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 HEATR9A2RTY3 570 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 ISM1B1AKI9 464 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 MFAP3LO75121 409 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 CNOT3O75175 753 aaKnown RBP14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 ONECUT2O95948 504 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 ALAS2P22557 587 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 ACADLP28330 430 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 CDC16Q13042 620 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 ITIH4Q14624 930 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 SLC9A5Q14940 896 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 TLR1Q15399 786 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 ZRSR2Q15696 482 aaKnown RBP14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 SYTL3Q4VX76 610 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 C11orf63Q6NUN7 778 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 PACS1Q6VY07 963 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 OVCH1Q7RTY7 1134 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 SRRM1Q8IYB3 904 aaKnown RBP14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 GRHL3Q8TE85 626 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 STYXQ8WUJ0 223 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 MARVELD3Q96A59 401 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 SLC22A18Q96BI1 424 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 NRTNQ99748 197 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 LHPPQ9H008 270 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 SLC26A1Q9H2B4 701 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 ZBTB20Q9HC78 741 aaPredicted RBP14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 SLC6A20Q9NP91 592 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 INTS7Q9NVH2 962 aaKnown RBP14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 SPHK1Q9NYA1 384 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 EURLQ9NYK6 297 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 SMARCAL1Q9NZC9 954 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 IL1RAPL1Q9NZN1 696 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 OSGIN2Q9Y236 505 aa14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 TDRKHQ9Y2W6 561 aaKnown RBP14.21□□□□□ -0.13
CCDC88B-201ENST00000301897 MACROD2A1Z1Q3 448 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 CCDC78A2IDD5 438 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 KCNN4O15554 427 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 HCRTR1O43613 425 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 RPN2P04844 631 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 RBP3P10745 1247 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 CETN2P41208 172 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 CDKN1CP49918 316 aaPredicted RBP14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 EIF3EP60228 445 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 OTUD4Q01804 1114 aaKnown RBP14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 OLIG2Q13516 323 aa14.2□□□□□ -0.14
CCDC88B-201ENST00000301897 DBN1Q16643 649 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms