RNA–Protein interactions for RNA: ENST00000639002.1

CD44-239, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 1 (best) BASIC

Gene CD44, Length 528 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-239ENST00000639002 CHMP24386 653 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 RIGQ13278 110 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 KRT32Q14532 448 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 IRF3Q14653 427 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 CRYMQ14894 314 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 TAF13Q15543 124 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 HLA-BQ31612 363 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 ITPRIPL2Q3MIP1 535 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 PHLDA2Q53GA4 152 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 TAF1BQ53T94 588 aaPredicted RBP3.45□□□□□ -1.86
CD44-239ENST00000639002 TMEM139Q8IV31 216 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 KIRREL3Q8IZU9 778 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 FBXL16Q8N461 479 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 SCFD2Q8WU76 684 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 UCMAQ8WVF2 138 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 SLCO2A1Q92959 643 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 CEP295NLQ96MC4 621 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 DPAGT1Q9H3H5 408 aa3.45□□□□□ -1.86
CD44-239ENST00000639002 FAM120CQ9NX05 1096 aaKnown RBP3.45□□□□□ -1.86
CD44-239ENST00000639002 LARSQ9P2J5 1176 aaKnown RBP3.45□□□□□ -1.86
CD44-239ENST00000639002 ZHX1Q9UKY1 873 aaPredicted RBP3.45□□□□□ -1.86
CD44-239ENST00000639002 HYKKA2RU49 373 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 OR10H2O60403 315 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 NXPH2O95156 264 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 WDPCPO95876 746 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 TRIM49P0CI25 452 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 TRIM49CP0CI26 452 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 IGHV4-31P0DP07 118 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 MAN1A1P33908 653 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 GSCP56915 257 aaPredicted RBP3.44□□□□□ -1.86
CD44-239ENST00000639002 ALFQ53S48 1182 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 SLC25A53Q5H9E4 307 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 JAKMIP3Q5VZ66 844 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 TMEM154Q6P9G4 183 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 FIGLAQ6QHK4 219 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 FIP1L1Q6UN15 594 aaKnown RBP3.44□□□□□ -1.86
CD44-239ENST00000639002 LINC00612Q8N6U2 182 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 GPATCH1Q9BRR8 931 aaKnown RBP3.44□□□□□ -1.86
CD44-239ENST00000639002 SHARPINQ9H0F6 387 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 UPF3AQ9H1J1 476 aaKnown RBP3.44□□□□□ -1.86
CD44-239ENST00000639002 UNC45AQ9H3U1 944 aa3.44□□□□□ -1.86
CD44-239ENST00000639002 CHMP1AQ9HD42 196 aaPredicted RBP3.44□□□□□ -1.86
CD44-239ENST00000639002 SEPT11Q9NVA2 429 aaKnown RBP3.44□□□□□ -1.86
CD44-239ENST00000639002 IGHV3OR16-10A0A075B7F0 116 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 A0A087X0M5 115 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 A0A1B0GX30 115 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 LNP1A1A4G5 178 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 KPNA7A9QM74 516 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 XRCC3O43542 346 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 RBMS1P29558 406 aaKnown RBP3.43□□□□□ -1.86
CD44-239ENST00000639002 ARL3P36405 182 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 HADHAP40939 763 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 SETQ01105 290 aaPredicted RBP3.43□□□□□ -1.86
CD44-239ENST00000639002 CXCL9Q07325 125 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 ELAVL2Q12926 359 aaKnown RBP3.43□□□□□ -1.86
CD44-239ENST00000639002 MAMLD1Q13495 774 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 SQLEQ14534 574 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 E2F5Q15329 346 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 SPDYCQ5MJ68 293 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 BTN2A1Q7KYR7 527 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 LDB1Q86U70 411 aaPredicted RBP3.43□□□□□ -1.86
CD44-239ENST00000639002 COMMD2Q86X83 199 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 ARHGAP24Q8N264 748 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 MOSPD2Q8NHP6 518 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 PHLDA1Q8WV24 401 aaPredicted RBP3.43□□□□□ -1.86
CD44-239ENST00000639002 WWTR1Q9GZV5 400 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 CPVLQ9H3G5 476 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 OLA1Q9NTK5 396 aaKnown RBP3.43□□□□□ -1.86
CD44-239ENST00000639002 NUDT4Q9NZJ9 180 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 THEGQ9P2T0 379 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 HACL1Q9UJ83 578 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 PLAGL1Q9UM63 463 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 MOB4Q9Y3A3 225 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 ZNF541Q9H0D2 1346 aa3.43□□□□□ -1.86
CD44-239ENST00000639002 ZNF318Q5VUA4 2279 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 FEZF1A0PJY2 475 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 C15orf61A6NNL5 157 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 NPHP1O15259 732 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 PAPSS1O43252 624 aaPredicted RBP3.42□□□□□ -1.86
CD44-239ENST00000639002 RNASEH1O60930 286 aaKnown RBP3.42□□□□□ -1.86
CD44-239ENST00000639002 SCGB1D1O95968 90 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 SLC6A6P31641 620 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 GABRA5P31644 462 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 MMP12P39900 470 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 HERV-K104P61576 105 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 CALCOCO2Q13137 446 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 RAPSNQ13702 412 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 SLC25A47Q6Q0C1 308 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 ADGRF2Q8IZF7 708 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 PPFIBP2Q8ND30 876 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 OR10G8Q8NGN5 311 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 ZNF519Q8TB69 540 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 USP28Q96RU2 1077 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 SOSTQ9BQB4 213 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 PITPNM3Q9BZ71 974 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 RTN4RQ9BZR6 473 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 FTOQ9C0B1 505 aaKnown RBP eCLIP3.42□□□□□ -1.86
CD44-239ENST00000639002 HRH4Q9H3N8 390 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 KCNK15Q9H427 330 aa3.42□□□□□ -1.86
CD44-239ENST00000639002 FGF21Q9NSA1 209 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 40.5 ms