RNA–Protein interactions for RNA: ENST00000636685.1

CLN3-249, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 801 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-249ENST00000636685 COX15Q7KZN9 410 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 NT5DC3Q86UY8 548 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 HOOK3Q86VS8 718 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 SPPL2CQ8IUH8 684 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 KBTBD2Q8IY47 623 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 SIRT6Q8N6T7 355 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 CNTD1Q8N815 330 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 OR52E1Q8NGJ3 308 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 OR2L2Q8NH16 312 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 CCDC110Q8TBZ0 833 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 ZDHHC19Q8WVZ1 309 aaPredicted RBP13.96□□□□□ -0.17
CLN3-249ENST00000636685 RBM41Q96IZ5 413 aaKnown RBP13.96□□□□□ -0.17
CLN3-249ENST00000636685 WDR54Q9H977 334 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 CTSFQ9UBX1 484 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 HEBP2Q9Y5Z4 205 aa13.96□□□□□ -0.17
CLN3-249ENST00000636685 COL6A5A8TX70 2615 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 KCNK1O00180 336 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 ZNHIT1O43257 154 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 PRAMEF2O60811 474 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 WDPCPO95876 746 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 HPP00738 406 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 ALBP02768 609 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 ZBTB17Q13105 803 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 PPP2R5EQ16537 467 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 LONRF2Q1L5Z9 754 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 Q6ZPB1 254 aaPredicted RBP13.95□□□□□ -0.18
CLN3-249ENST00000636685 AMIGO1Q86WK6 493 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 CFAP206Q8IYR0 622 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 PHC3Q8NDX5 983 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 CA5BP1Q8WTZ4 195 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 SDCCAG3Q96C92 435 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 C8orf44Q96CB5 159 aa13.95□□□□□ -0.18
CLN3-249ENST00000636685 TFB2MQ9H5Q4 396 aaKnown RBP13.95□□□□□ -0.18
CLN3-249ENST00000636685 MRPS2Q9Y399 296 aaKnown RBP13.95□□□□□ -0.18
CLN3-249ENST00000636685 USP1O94782 785 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 PRR35P0CG20 571 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 FOSL1P15407 271 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 UGT2B7P16662 529 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 IGFBP2P18065 325 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 MSH3P20585 1137 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 AKT1P31749 480 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 GCGRP47871 477 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 CEBPEQ15744 281 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 SLC5A12Q1EHB4 618 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 PRIMA1Q86XR5 153 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 DNAJC22Q8N4W6 341 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 DNAAF3Q8N9W5 541 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 CCNYQ8ND76 341 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.94□□□□□ -0.18
CLN3-249ENST00000636685 VPS50Q96JG6 964 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 SMR3AQ99954 134 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 ZNF559Q9BR84 538 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 CEP41Q9BYV8 373 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 TSPAN10Q9H1Z9 355 aaPredicted RBP13.94□□□□□ -0.18
CLN3-249ENST00000636685 SLC26A1Q9H2B4 701 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 CBX8Q9HC52 389 aa13.94□□□□□ -0.18
CLN3-249ENST00000636685 A0A1B0GX78 115 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 FAM227AF5H4B4 570 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 SLCO2B1O94956 709 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 PRAMEF1O95521 474 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 ONECUT2O95948 504 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 ACPPP15309 386 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 EEF1GP26641 437 aaKnown RBP13.93□□□□□ -0.18
CLN3-249ENST00000636685 HMGCLP35914 325 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 SPAM1P38567 509 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 GBE1Q04446 702 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 PRKG2Q13237 762 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 NOMO1Q15155 1222 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 CCDC183Q5T5S1 534 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 C3P1Q6ZMU1 363 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 METTL27Q8N6F8 245 aaPredicted RBP13.93□□□□□ -0.18
CLN3-249ENST00000636685 AGAP11Q8TF27 550 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 DLG3Q92796 817 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 IMP4Q96G21 291 aaKnown RBP13.93□□□□□ -0.18
CLN3-249ENST00000636685 OR2A14Q96R47 310 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 CCM2Q9BSQ5 444 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 SYT11Q9BT88 431 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 HGH1Q9BTY7 390 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 CRB3Q9BUF7 120 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 CHRNA10Q9GZZ6 450 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 NPDC1Q9NQX5 325 aaPredicted RBP13.93□□□□□ -0.18
CLN3-249ENST00000636685 MYO1AQ9UBC5 1043 aa13.93□□□□□ -0.18
CLN3-249ENST00000636685 GLYATL1P3A0A0U1RQE8 302 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 GAPDHSO14556 408 aaPredicted RBP13.92□□□□□ -0.18
CLN3-249ENST00000636685 MAP2K7O14733 419 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 BUD23O43709 281 aaKnown RBP13.92□□□□□ -0.18
CLN3-249ENST00000636685 SGTAO43765 313 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 PMPCBO75439 489 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 NDST3O95803 873 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 UQCRHP07919 91 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 CELA2AP08217 269 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 PIM1P11309 404 aaPredicted RBP13.92□□□□□ -0.18
CLN3-249ENST00000636685 OR1D4P47884 311 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 SLC25A11Q02978 314 aaKnown RBP13.92□□□□□ -0.18
CLN3-249ENST00000636685 FOLH1Q04609 750 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 CACNG1Q06432 222 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 SLC10A2Q12908 348 aaPredicted RBP13.92□□□□□ -0.18
CLN3-249ENST00000636685 HIBCHQ6NVY1 386 aaPredicted RBP13.92□□□□□ -0.18
CLN3-249ENST00000636685 SARM1Q6SZW1 724 aa13.92□□□□□ -0.18
CLN3-249ENST00000636685 PRSS58Q8IYP2 241 aa13.92□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms