RNA–Protein interactions for RNA: ENST00000611614.4

COPS7B-223, Transcript of COP9 signalosome subunit 7B, human

TSL 3 BASIC

Gene COPS7B, Length 2,468 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COPS7B-223	ENST00000611614	OR4F21	O95013	312 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	GJA4	P35212	333 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	HNF1B	P35680	557 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	CAPRIN1	Q14444	709 aa	Known RBP	13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	ITPRIPL2	Q3MIP1	535 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	PDCD4	Q53EL6	469 aa	Known RBP	13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614		Q6ZNX1	250 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	GPR180	Q86V85	440 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	FAM47B	Q8NA70	645 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	CHST14	Q8NCH0	376 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	FRS2	Q8WU20	508 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	ABTB1	Q969K4	478 aa	Predicted RBP	13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	ESAM	Q96AP7	390 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	EID2B	Q96D98	161 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	SLC45A3	Q96JT2	553 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	ACOX2	Q99424	681 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	CD320	Q9NPF0	282 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	ASB1	Q9Y576	335 aa		13.6	□□□□□ -0.23
COPS7B-223	ENST00000611614	GPR39	O43194	453 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	XPA	P23025	273 aa	Predicted RBP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	LTBR	P36941	435 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	ERVK-8	P63133	956 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	RCAN2	Q14206	197 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	SCIMP	Q6UWF3	145 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	TRIM74	Q86UV6	250 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	TRIM73	Q86UV7	250 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	SMYD1	Q8NB12	490 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	SMRP1	Q8NCR6	262 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	OR2T11	Q8NH01	316 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	CANT1	Q8WVQ1	401 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	ISOC1	Q96CN7	298 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	ECHDC3	Q96DC8	303 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	SCRN2	Q96FV2	425 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	MSLNL	Q96KJ4	702 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	C9orf16	Q9BUW7	83 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	YTHDF1	Q9BYJ9	559 aa	Known RBP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	TRIM54	Q9BYV2	358 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	TTYH1	Q9H313	450 aa	Predicted RBP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	MUC13	Q9H3R2	512 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	BRD9	Q9H8M2	597 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	IL36A	Q9UHA7	158 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	PCDHA9	Q9Y5H5	950 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	PRRT4	C9JH25	899 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	AKAP10	O43572	662 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	EED	O75530	441 aa	Known RBP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	SLC22A3	O75751	556 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	FCGR1A	P12314	374 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	IL10	P22301	178 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	RPS3	P23396	243 aa	Known RBP eCLIP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	HMOX2	P30519	316 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	EIF2D	P41214	584 aa	Known RBP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	ZFP36L2	P47974	494 aa	Known RBP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	NFYC	Q13952	458 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	PCBP2	Q15366	365 aa	Known RBP eCLIP	13.59	□□□□□ -0.23	5e-7	■■■■□ 21.4
COPS7B-223	ENST00000611614	ARSI	Q5FYB1	569 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	LCN8	Q6JVE9	175 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	TTC33	Q6PID6	262 aa	Predicted RBP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	SERPINA13P	Q6UXR4	307 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	FRA10AC1	Q70Z53	315 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	PATL1	Q86TB9	770 aa	Known RBP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	ADAMTSL2	Q86TH1	951 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	CDYL2	Q8N8U2	506 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	TMEM45A	Q9NWC5	275 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	ZIM2	Q9NZV7	527 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	ACTR3B	Q9P1U1	418 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	CD207	Q9UJ71	328 aa		13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	TNPO3	Q9Y5L0	923 aa	Known RBP	13.59	□□□□□ -0.23
COPS7B-223	ENST00000611614	SOCS2	O14508	198 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	CBFA2T3	O75081	653 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	LEFTY1	O75610	366 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	TIPRL	O75663	272 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	S100B	P04271	92 aa	Predicted RBP	13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	HNRNPC	P07910	306 aa	Known RBP eCLIP	13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	ZNF7	P17097	686 aa	Predicted RBP	13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	POU3F3	P20264	500 aa	Predicted RBP	13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	MAGEA8	P43361	318 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	ERVPABLB-1	P60509	514 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	UFM1	P61960	85 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	GAB4	Q2WGN9	574 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	PTRHD1	Q6GMV3	140 aa	Known RBP	13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	TPRG1	Q6ZUI0	275 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	SERPINA9	Q86WD7	417 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	CLVS1	Q8IUQ0	354 aa	Predicted RBP	13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	CSGALNACT1	Q8TDX6	532 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	NXPE3	Q969Y0	559 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	TMEM125	Q96AQ2	219 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	VPS33A	Q96AX1	596 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	TEX37	Q96LM6	180 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	C19orf43	Q9BQ61	176 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	CLPB	Q9H078	707 aa		13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	LEF1	Q9UJU2	399 aa	Predicted RBP	13.58	□□□□□ -0.23
COPS7B-223	ENST00000611614	EDDM13	A0A1B0GTR0	161 aa		13.58	□□□□□ -0.24
COPS7B-223	ENST00000611614	ASPDH	A6ND91	283 aa		13.58	□□□□□ -0.24
COPS7B-223	ENST00000611614	CCDC154	A6NI56	674 aa		13.58	□□□□□ -0.24
COPS7B-223	ENST00000611614		A8MX80	341 aa		13.58	□□□□□ -0.24
COPS7B-223	ENST00000611614	CLDN7	O95471	211 aa		13.58	□□□□□ -0.24
COPS7B-223	ENST00000611614	APOD	P05090	189 aa		13.58	□□□□□ -0.24
COPS7B-223	ENST00000611614	POLR2J	P52435	117 aa	Known RBP	13.58	□□□□□ -0.24
COPS7B-223	ENST00000611614	ARHGEF7	Q14155	803 aa		13.58	□□□□□ -0.24
COPS7B-223	ENST00000611614	C6orf136	Q5SQH8	315 aa		13.58	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms