RNA–Protein interactions for RNA: ENST00000601150.5

TRIM28-215, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 915 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-215ENST00000601150 DCUN1D3Q8IWE4 304 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 CNTN4Q8IWV2 1026 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 ADGRF3Q8IZF5 1079 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 FBXO36Q8NEA4 188 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 SKA2Q8WVK7 121 aaPredicted RBP16.35■□□□□ 0.21
TRIM28-215ENST00000601150 HNRNPLLQ8WVV9 542 aaKnown RBP16.35■□□□□ 0.21
TRIM28-215ENST00000601150 KCNJ9Q92806 393 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 SLC41A2Q96JW4 573 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 NRTNQ99748 197 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 ZPBPQ9BS86 351 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 PPANQ9NQ55 473 aaKnown RBP16.35■□□□□ 0.21
TRIM28-215ENST00000601150 KLHL42Q9P2K6 505 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 GALPQ9UBC7 116 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 PCDHB11Q9Y5F2 797 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 MRFAP1Q9Y605 127 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 CACNA1BQ00975 2339 aa16.35■□□□□ 0.21
TRIM28-215ENST00000601150 ZZEF1O43149 2961 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 POLR1CO15160 346 aaPredicted RBP16.34■□□□□ 0.21
TRIM28-215ENST00000601150 TPBGLP0DKB5 382 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 LIPCP11150 499 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 CARSP49589 748 aaKnown RBP16.34■□□□□ 0.21
TRIM28-215ENST00000601150 ARL4DP49703 201 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 CLCN7P51798 805 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 CAV1Q03135 178 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 FOXM1Q08050 763 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 CLN3Q13286 438 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 FRG1Q14331 258 aaKnown RBP16.34■□□□□ 0.21
TRIM28-215ENST00000601150 FASTKD3Q14CZ7 662 aaKnown RBP16.34■□□□□ 0.21
TRIM28-215ENST00000601150 TTLL9Q3SXZ7 439 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 BROXQ5VW32 411 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 C8orf74Q6P047 294 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 TTC23LQ6PF05 361 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 ZFAND4Q86XD8 727 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 SIDT2Q8NBJ9 832 aaKnown RBP16.34■□□□□ 0.21
TRIM28-215ENST00000601150 KIF18AQ8NI77 898 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 FOPNLQ96NB1 174 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 CTRCQ99895 268 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 AARSD1Q9BTE6 412 aaKnown RBP16.34■□□□□ 0.21
TRIM28-215ENST00000601150 C1GALT1Q9NS00 363 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 OR6C2Q9NZP2 312 aa16.34■□□□□ 0.21
TRIM28-215ENST00000601150 PIPSLA2A3N6 862 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 IQCJ-SCHIP1C9J366 451 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-215ENST00000601150 STMND1H3BQB6 276 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 EIF3HO15372 352 aaKnown RBP eCLIP16.33■□□□□ 0.2
TRIM28-215ENST00000601150 ZBTB11O95625 1053 aaPredicted RBP16.33■□□□□ 0.2
TRIM28-215ENST00000601150 CDH3P22223 829 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 PRDX3P30048 256 aaKnown RBP16.33■□□□□ 0.2
TRIM28-215ENST00000601150 SH3BP2P78314 561 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 TLE3Q04726 772 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 IL11RAQ14626 422 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 KYNUQ16719 465 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 ACSBG2Q5FVE4 666 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 TEDDM1Q5T9Z0 273 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 CYB5D1Q6P9G0 228 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 TRMT10BQ6PF06 316 aaKnown RBP16.33■□□□□ 0.2
TRIM28-215ENST00000601150 C19orf48Q6RUI8 117 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 GALNT7Q86SF2 657 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 ZBED8Q8IZ13 594 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 MNS1Q8NEH6 495 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 OR6C1Q96RD1 312 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 APMAPQ9HDC9 416 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 ACTR10Q9NZ32 417 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 TSR3Q9UJK0 312 aaKnown RBP16.33■□□□□ 0.2
TRIM28-215ENST00000601150 PLAGL1Q9UM63 463 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 MED16Q9Y2X0 877 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 DHRS7Q9Y394 339 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 NFS1Q9Y697 457 aa16.33■□□□□ 0.2
TRIM28-215ENST00000601150 VPS26AO75436 327 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 MATN4O95460 622 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 C1orf105O95561 183 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 CHRM5P08912 532 aaPredicted RBP16.32■□□□□ 0.2
TRIM28-215ENST00000601150 GABRB3P28472 473 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 PKLRP30613 574 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 CCNFP41002 786 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 RAB28P51157 221 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 PLTPP55058 493 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 HSD11B2P80365 405 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 MGAT5Q09328 741 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 COL28A1Q2UY09 1125 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 FBXO38Q6PIJ6 1188 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 NEK10Q6ZWH5 1172 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 D2HGDHQ8N465 521 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 GIMAP7Q8NHV1 300 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 MAGEC3Q8TD91 643 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 PYROXD1Q8WU10 500 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 INPP5DQ92835 1189 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 RAD51AP1Q96B01 352 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 PPM1MQ96MI6 270 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 GPR21Q99679 349 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 SLC30A3Q99726 388 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 LRRC1Q9BTT6 524 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 PITPNM3Q9BZ71 974 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 TWSG1Q9GZX9 223 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 SAYSD1Q9NPB0 183 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 SOHLH2Q9NX45 425 aa16.32■□□□□ 0.2
TRIM28-215ENST00000601150 RUVBL2Q9Y230 463 aaKnown RBP16.32■□□□□ 0.2
TRIM28-215ENST00000601150 DSPP15924 2871 aaKnown RBP16.32■□□□□ 0.2
TRIM28-215ENST00000601150 SNRNP200O75643 2136 aaKnown RBP16.31■□□□□ 0.2
TRIM28-215ENST00000601150 SLC9B1P1A6NJY1 282 aa16.31■□□□□ 0.2
TRIM28-215ENST00000601150 KRT37O76014 449 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms