RNA–Protein interactions for RNA: ENST00000600552.5

SHKBP1-223, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 4

Gene SHKBP1, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-223ENST00000600552 NCF4Q15080 339 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 P3H1Q32P28 736 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 ZNF658BQ4V348 819 aaPredicted RBP17■□□□□ 0.31
SHKBP1-223ENST00000600552 PRR30Q53SZ7 412 aaPredicted RBP17■□□□□ 0.31
SHKBP1-223ENST00000600552 HIST2H2BCQ6DN03 193 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 FAM20CQ8IXL6 584 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 C2orf73Q8N5S3 287 aaPredicted RBP17■□□□□ 0.31
SHKBP1-223ENST00000600552 C19orf47Q8N9M1 422 aaKnown RBP17■□□□□ 0.31
SHKBP1-223ENST00000600552 CFAP61Q8NHU2 1237 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 ADAMTS17Q8TE56 1095 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 ATG4AQ8WYN0 398 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 TBRG4Q969Z0 631 aaKnown RBP eCLIP17■□□□□ 0.31
SHKBP1-223ENST00000600552 NUDT9Q9BW91 350 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 RBSNQ9H1K0 784 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 SLAMF7Q9NQ25 335 aa17■□□□□ 0.31
SHKBP1-223ENST00000600552 PCDHGA9Q9Y5G4 932 aaKnown RBP17■□□□□ 0.31
SHKBP1-223ENST00000600552 E7EVH7 732 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 H7C0S8 307 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 HCRTR1O43613 425 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 OR1I1O60431 355 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 ZNF189O75820 626 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 AP2A1O95782 977 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 GAS8O95995 478 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 IFNB1P01574 187 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 CTSBP07858 339 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 CHRM5P08912 532 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 HBQ1P09105 142 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 OR56A5P0C7T3 313 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 SHMT2P34897 504 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 FOXL2P58012 376 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 KIF5AQ12840 1032 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 ZIC1Q15915 447 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 FHL5Q5TD97 284 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 RAB43Q86YS6 212 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 ZNF655Q8N720 491 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 LMNTD1Q8N9Z9 388 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 OR6P1Q8NGX9 317 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 HDAC10Q969S8 669 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 SGSM3Q96HU1 749 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 OR2A14Q96R47 310 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 BAG1Q99933 345 aaPredicted RBP16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 SLC2A6Q9UGQ3 507 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 PADI2Q9Y2J8 665 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 KLHL20Q9Y2M5 609 aa16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 PTRH2Q9Y3E5 179 aaKnown RBP16.99■□□□□ 0.31
SHKBP1-223ENST00000600552 CLEC18AA5D8T8 446 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 DPM1O60762 260 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 RRADP55042 308 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 CLEC18BQ6UXF7 455 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 PRUNE1Q86TP1 453 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 LINC00523Q86TU6 105 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 TAX1BP1Q86VP1 789 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 SYCE1Q8N0S2 351 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 CLEC18CQ8NCF0 446 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 TCTN2Q96GX1 697 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 MRFAP1L1Q96HT8 127 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 C19orf43Q9BQ61 176 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 TXLNGQ9NUQ3 528 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 GPR83Q9NYM4 423 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 IFT80Q9P2H3 777 aaPredicted RBP16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 DHCR7Q9UBM7 475 aaKnown RBP16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 NDOR1Q9UHB4 597 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 POLG2Q9UHN1 485 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 CDYLQ9Y232 598 aa16.98■□□□□ 0.31
SHKBP1-223ENST00000600552 A0A0J9YY10 115 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 MROH6A6NGR9 719 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 MIF4GDA9UHW6 222 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 BHMG1C9JSJ3 638 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 MASP2O00187 686 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 GOT2P00505 430 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 GSTM1P09488 218 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 TPBGLP0DKB5 382 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 ALAS2P22557 587 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 ACADLP28330 430 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 FOXN2P32314 431 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 GSTM4Q03013 218 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 HSPA14Q0VDF9 509 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 SNX1Q13596 522 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 ITIH4Q14624 930 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 INPP5JQ15735 1006 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 JMJD6Q6NYC1 403 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 MED25Q71SY5 747 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 KLHDC8BQ8IXV7 354 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 TBC1D21Q8IYX1 336 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 TMEM102Q8N9M5 508 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 GALNT11Q8NCW6 608 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 SLC35B2Q8TB61 432 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 C1orf54Q8WWF1 131 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 TTC1Q99614 292 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 ETNK1Q9HBU6 452 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 MLXIPLQ9NP71 852 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 CAMSAP3Q9P1Y5 1249 aaPredicted RBP16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 MAP4K5Q9Y4K4 846 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 SNRNP200O75643 2136 aaKnown RBP16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 ESPL1Q14674 2120 aa16.97■□□□□ 0.31
SHKBP1-223ENST00000600552 UTP20O75691 2785 aaKnown RBP16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 RELNP78509 3460 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 QSOX1O00391 747 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 PEX12O00623 359 aa16.96■□□□□ 0.31
SHKBP1-223ENST00000600552 ETS1P14921 441 aa16.96■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms