RNA–Protein interactions for RNA: ENST00000598209.5

UPF1-205, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 551 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-205ENST00000598209 KMT5CQ86Y97 462 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 ANKMY2Q8IV38 441 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 DCUN1D3Q8IWE4 304 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 ADGRF3Q8IZF5 1079 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 ZBTB2Q8N680 514 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 C2CD4AQ8NCU7 369 aaPredicted RBP13.44□□□□□ -0.26
UPF1-205ENST00000598209 SKA2Q8WVK7 121 aaPredicted RBP13.44□□□□□ -0.26
UPF1-205ENST00000598209 SLC41A2Q96JW4 573 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 PPM1MQ96MI6 270 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 TEFMQ96QE5 360 aaKnown RBP13.44□□□□□ -0.26
UPF1-205ENST00000598209 RAB17Q9H0T7 212 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 LATS2Q9NRM7 1088 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 GRHL1Q9NZI5 618 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 GALPQ9UBC7 116 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 TSR3Q9UJK0 312 aaKnown RBP13.44□□□□□ -0.26
UPF1-205ENST00000598209 PLAGL1Q9UM63 463 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 PCM1Q15154 2024 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 ZZEF1O43149 2961 aa13.44□□□□□ -0.26
UPF1-205ENST00000598209 C2orf74A8MZ97 194 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 KIF2AO00139 706 aaPredicted RBP13.43□□□□□ -0.26
UPF1-205ENST00000598209 POLR1CO15160 346 aaPredicted RBP13.43□□□□□ -0.26
UPF1-205ENST00000598209 KDM1AO60341 852 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 LIPCP11150 499 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 CDH3P22223 829 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 ATP5DP30049 168 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 CARSP49589 748 aaKnown RBP13.43□□□□□ -0.26
UPF1-205ENST00000598209 ARL4DP49703 201 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 CLCN7P51798 805 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 TGIF1Q15583 401 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 KYNUQ16719 465 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 ACSBG2Q5FVE4 666 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 BROXQ5VW32 411 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 TRMT10BQ6PF06 316 aaKnown RBP13.43□□□□□ -0.26
UPF1-205ENST00000598209 FBXO38Q6PIJ6 1188 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 CNTN4Q8IWV2 1026 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 CARFQ8N187 725 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 SIDT2Q8NBJ9 832 aaKnown RBP13.43□□□□□ -0.26
UPF1-205ENST00000598209 FBXO36Q8NEA4 188 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 FOPNLQ96NB1 174 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 OR6C1Q96RD1 312 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 SLC30A3Q99726 388 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 ZPBPQ9BS86 351 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 PPANQ9NQ55 473 aaKnown RBP13.43□□□□□ -0.26
UPF1-205ENST00000598209 C1GALT1Q9NS00 363 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 WDR70Q9NW82 654 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 ACTR10Q9NZ32 417 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 PTPRQQ9UMZ3 2332 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 RUVBL2Q9Y230 463 aaKnown RBP13.43□□□□□ -0.26
UPF1-205ENST00000598209 MED16Q9Y2X0 877 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 PCDHB11Q9Y5F2 797 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 NFS1Q9Y697 457 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 COMMD10Q9Y6G5 202 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 ANKRD12Q6UB98 2062 aa13.43□□□□□ -0.26
UPF1-205ENST00000598209 PIPSLA2A3N6 862 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 IQCJ-SCHIP1C9J366 451 aaPredicted RBP13.42□□□□□ -0.26
UPF1-205ENST00000598209 STMND1H3BQB6 276 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 ZBTB11O95625 1053 aaPredicted RBP13.42□□□□□ -0.26
UPF1-205ENST00000598209 CHRM5P08912 532 aaPredicted RBP13.42□□□□□ -0.26
UPF1-205ENST00000598209 FOLR1P15328 257 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 GABRB3P28472 473 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 PRDX3P30048 256 aaKnown RBP13.42□□□□□ -0.26
UPF1-205ENST00000598209 BDKRB1P46663 353 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 HSD11B2P80365 405 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 CBLBQ13191 982 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 KCNAB1Q14722 419 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 TTLL9Q3SXZ7 439 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 TEDDM1Q5T9Z0 273 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 C8orf74Q6P047 294 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 TTC23LQ6PF05 361 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 KIAA0408Q6ZU52 694 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 DTX1Q86Y01 620 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 ZBED8Q8IZ13 594 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 GIMAP7Q8NHV1 300 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 KCNJ9Q92806 393 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 CRELD1Q96HD1 420 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 GPR21Q99679 349 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 AARSD1Q9BTE6 412 aaKnown RBP13.42□□□□□ -0.26
UPF1-205ENST00000598209 OR6C2Q9NZP2 312 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 KLHL42Q9P2K6 505 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 SLC17A6Q9P2U8 582 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 CIDEBQ9UHD4 219 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 MRFAP1Q9Y605 127 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 SPTBP11277 2137 aa13.42□□□□□ -0.26
UPF1-205ENST00000598209 SLC9B1P1A6NJY1 282 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 EIF3HO15372 352 aaKnown RBP eCLIP13.41□□□□□ -0.26
UPF1-205ENST00000598209 MATN4O95460 622 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 C1orf105O95561 183 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 AHSGP02765 367 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 EBLN1P0CF75 366 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 UGT2B7P16662 529 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 PKLRP30613 574 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 RAB28P51157 221 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 PLTPP55058 493 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 SLC7A5Q01650 507 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 ACY1Q03154 408 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 TUBB3Q13509 450 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 CUL1Q13616 776 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 TUBB2AQ13885 445 aa13.41□□□□□ -0.26
UPF1-205ENST00000598209 FRG1Q14331 258 aaKnown RBP13.41□□□□□ -0.26
UPF1-205ENST00000598209 GRB7Q14451 532 aa13.41□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms