RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 PSMD13Q9UNM6 376 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 DOLKQ9UPQ8 538 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 PLEKHM1Q9Y4G2 1056 aa14.86□□□□□ -0.03
TRIM28-209ENST00000597423 PRR19A6NJB7 356 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 SLCO1B7G3V0H7 640 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 MYO1CO00159 1063 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 EDF1O60869 148 aaKnown RBP14.85□□□□□ -0.03
TRIM28-209ENST00000597423 KATNA1O75449 491 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 TGDSO95455 350 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 FAM107AO95990 144 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 NME1P15531 152 aaKnown RBP14.85□□□□□ -0.03
TRIM28-209ENST00000597423 HK2P52789 917 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 SEC24CP53992 1094 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 PRKAA1Q13131 559 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 ARHGAP19Q14CB8 494 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 UNC50Q53HI1 259 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 SLC30A9Q6PML9 568 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 AVL9Q8NBF6 648 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 ZBTB44Q8NCP5 570 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 UBTD2Q8WUN7 234 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 ZFPM2Q8WW38 1151 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 RMDN2Q96LZ7 410 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 TMEM237Q96Q45 408 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 CCT8L2Q96SF2 557 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 INSM2Q96T92 566 aaPredicted RBP14.85□□□□□ -0.03
TRIM28-209ENST00000597423 PKP4Q99569 1192 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 HGH1Q9BTY7 390 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 RAB11FIP5Q9BXF6 653 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 SLC32A1Q9H598 525 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 PRDM8Q9NQV8 689 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 OPTCQ9UBM4 332 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 TBC1D29Q9UFV1 150 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 PILRBQ9UKJ0 227 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 RAP2CQ9Y3L5 183 aa14.85□□□□□ -0.03
TRIM28-209ENST00000597423 TRIOO75962 3097 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 KIR2DS5A0A0G2JLQ3 304 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 A0A0G2JNG1 304 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 K7EPI3 171 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 KIR2DS3K7RE56 304 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 DFNA5O60443 496 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 CCNT2O60583 730 aaKnown RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 MTHFD1P11586 935 aaKnown RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 F3P13726 295 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 EPB42P16452 691 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 CCND1P24385 295 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 AK4P27144 223 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 ARRB1P49407 418 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 OCRLQ01968 901 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 CLCQ05315 142 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 GABPB1Q06547 395 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 SRSF5Q13243 272 aaKnown RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 KIR2DS5Q14953 304 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 RPE65Q16518 533 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 ZNF542PQ5EBM4 170 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 PRRT3Q5FWE3 981 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 ARL13AQ5H913 290 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 XKR5Q6UX68 686 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 FRMD7Q6ZUT3 714 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 FAM47EQ6ZV65 393 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 LRRC70Q7Z2Q7 622 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 SPATS2Q86XZ4 545 aaKnown RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 WDR75Q8IWA0 830 aaKnown RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 TRIM48Q8IWZ4 208 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 SPDYE1Q8NFV5 336 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 PIGKQ92643 395 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 ATP6V1E2Q96A05 226 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 CXorf40BQ96DE9 158 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 FAR2Q96K12 515 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 MAGEB10Q96LZ2 347 aaPredicted RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 SIKE1Q9BRV8 207 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 TRIM55Q9BYV6 548 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 FAM107BQ9H098 131 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 IMP3Q9NV31 184 aaKnown RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 FGFR1OP2Q9NVK5 253 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 SPATA7Q9P0W8 599 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 TAAR2Q9P1P5 351 aa14.84□□□□□ -0.03
TRIM28-209ENST00000597423 TDRKHQ9Y2W6 561 aaKnown RBP14.84□□□□□ -0.03
TRIM28-209ENST00000597423 PRR33A8MZF0 331 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 NDUFAB1O14561 156 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 SCAMP1O15126 338 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 TAPBPO15533 448 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 GALR2O43603 387 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 RRP9O43818 475 aaKnown RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 GPR37L1O60883 481 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 CRCPO75575 148 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 SIX3O95343 332 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 RPS17P08708 135 aaKnown RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 DRD4P21917 467 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 BDKRB1P46663 353 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 HSPA7P48741 367 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 PKNOX1P55347 436 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 LCP2Q13094 533 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 GTF2H2Q13888 395 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 CLCA4Q14CN2 919 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 RBBP7Q16576 425 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 DUOXA1Q1HG43 343 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 GKAP1Q5VSY0 366 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 CAPN13Q6MZZ7 669 aaPredicted RBP14.83□□□□□ -0.04
TRIM28-209ENST00000597423 GTF2H2CQ6P1K8 395 aa14.83□□□□□ -0.04
TRIM28-209ENST00000597423 IYDQ6PHW0 289 aa14.83□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms