RNA–Protein interactions for RNA: ENST00000596814.5

VRK3-212, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 1,736 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-212ENST00000596814 CELA2BP08218 269 aaPredicted RBP14.27□□□□□ -0.12
VRK3-212ENST00000596814 RPS17P08708 135 aaKnown RBP14.27□□□□□ -0.12
VRK3-212ENST00000596814 DPP6P42658 865 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 AGTR2P50052 363 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 HNMTP50135 292 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 RCN2Q14257 317 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 CLCA4Q14CN2 919 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 CCSMST1Q4G0I0 132 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 FBXO48Q5FWF7 155 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 PEAR1Q5VY43 1037 aaPredicted RBP14.27□□□□□ -0.12
VRK3-212ENST00000596814 ABRAXAS1Q6UWZ7 409 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 FAM47EQ6ZV65 393 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 TAF8Q7Z7C8 310 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 UBTD2Q8WUN7 234 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 CCDC138Q96M89 665 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 ZNF317Q96PQ6 595 aaPredicted RBP14.27□□□□□ -0.12
VRK3-212ENST00000596814 TMEM79Q9BSE2 394 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 SLCO1B3Q9NPD5 702 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 ACSS2Q9NR19 701 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 TAAR2Q9P1P5 351 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 TNPO3Q9Y5L0 923 aaKnown RBP14.27□□□□□ -0.12
VRK3-212ENST00000596814 HEBP2Q9Y5Z4 205 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 ZNF318Q5VUA4 2279 aa14.27□□□□□ -0.12
VRK3-212ENST00000596814 TMEM131Q92545 1883 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 ARHGEF17Q96PE2 2063 aaPredicted RBP14.27□□□□□ -0.13
VRK3-212ENST00000596814 A6NCN8 305 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 LRRC14BA6NHZ5 514 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 OR52A4PA6NMU1 304 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 MYO1CO00159 1063 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 TAPBPO15533 448 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 NPHS1O60500 1241 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 SNNO75324 88 aaPredicted RBP14.27□□□□□ -0.13
VRK3-212ENST00000596814 SUPT7LO94864 414 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 EML2O95834 649 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 MTHFD1P11586 935 aaKnown RBP14.27□□□□□ -0.13
VRK3-212ENST00000596814 F3P13726 295 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 HOXD12P35452 270 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 SERPINB5P36952 375 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 SLC1A6P48664 564 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 SEC24CP53992 1094 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 ABCE1P61221 599 aaKnown RBP14.27□□□□□ -0.13
VRK3-212ENST00000596814 HNRNPKP61978 463 aaKnown RBP eCLIP14.27□□□□□ -0.13
VRK3-212ENST00000596814 C1orf61Q13536 156 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 PCBP2Q15366 365 aaKnown RBP eCLIP14.27□□□□□ -0.13
VRK3-212ENST00000596814 ELOCQ15369 112 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 RPE65Q16518 533 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 C18orf21Q32NC0 220 aaPredicted RBP14.27□□□□□ -0.13
VRK3-212ENST00000596814 UNC50Q53HI1 259 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 ANKS6Q68DC2 871 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 TBC1D21Q8IYX1 336 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 PHC3Q8NDX5 983 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 OR9A1PQ8NGU1 263 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 ATL1Q8WXF7 558 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 RAD51AP1Q96B01 352 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 FBXL8Q96CD0 374 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 MOCOSQ96EN8 888 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 PKP4Q99569 1192 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 HGH1Q9BTY7 390 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 C1QTNF3Q9BXJ4 246 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 DRC3Q9H069 523 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 ERVMER34-1Q9H9K5 563 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 THAP1Q9NVV9 213 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 SCHIP1Q9P0W5 487 aaPredicted RBP14.27□□□□□ -0.13
VRK3-212ENST00000596814 SPASTQ9UBP0 616 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 CIDEBQ9UHD4 219 aa14.27□□□□□ -0.13
VRK3-212ENST00000596814 PI4KAP42356 2102 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 GMNCA6NCL1 334 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 SRRM3A6NNA2 597 aaPredicted RBP14.26□□□□□ -0.13
VRK3-212ENST00000596814 LYPLA1O75608 230 aaPredicted RBP14.26□□□□□ -0.13
VRK3-212ENST00000596814 HSPA4LO95757 839 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 CTSKP43235 329 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 HSPA7P48741 367 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 NAA20P61599 178 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 OCRLQ01968 901 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 KRT33BQ14525 404 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 KIF19Q2TAC6 998 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 FRMD7Q6ZUT3 714 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 RABEPKQ7Z6M1 372 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 LRRC34Q8IZ02 419 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 LMX1AQ8TE12 382 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 PPP4R1Q8TF05 950 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 ESAMQ96AP7 390 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 CNDP1Q96KN2 507 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 FERD3LQ96RJ6 166 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 EPN3Q9H201 632 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 GSTO2Q9H4Y5 243 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 MVB12BQ9H7P6 319 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 FGFR1OP2Q9NVK5 253 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 STOX2Q9P2F5 926 aaPredicted RBP14.26□□□□□ -0.13
VRK3-212ENST00000596814 PCTPQ9UKL6 214 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 TDRKHQ9Y2W6 561 aaKnown RBP14.26□□□□□ -0.13
VRK3-212ENST00000596814 ASB1Q9Y576 335 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 SNX11Q9Y5W9 270 aa14.26□□□□□ -0.13
VRK3-212ENST00000596814 ITM2AO43736 263 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 EDF1O60869 148 aaKnown RBP14.25□□□□□ -0.13
VRK3-212ENST00000596814 SLC16A8O95907 504 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 IMPA1P29218 277 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 ARRB2P32121 409 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 PRKG2Q13237 762 aa14.25□□□□□ -0.13
VRK3-212ENST00000596814 METTL2BQ6P1Q9 378 aaKnown RBP14.25□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 38 ms