RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 TMTC4Q5T4D3 741 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 ANKRD22Q5VYY1 191 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 LCN10Q6JVE6 187 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 LRRC8BQ6P9F7 803 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 ZNF449Q6P9G9 518 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 SPESP1Q6UW49 350 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 CES3Q6UWW8 571 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 C4orf22Q6V702 233 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 UNC5AQ6ZN44 842 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 CDHR3Q6ZTQ4 885 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 MPP5Q8N3R9 675 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 C19orf47Q8N9M1 422 aaKnown RBP12.63□□□□□ -0.39
LIG1-212ENST00000596549 OR8K5Q8NH50 307 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 MS4A14Q96JA4 679 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 OR2A14Q96R47 310 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 TRIM56Q9BRZ2 755 aaKnown RBP12.63□□□□□ -0.39
LIG1-212ENST00000596549 TRIM4Q9C037 500 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 IL22Q9GZX6 179 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 MRM3Q9HC36 420 aaKnown RBP12.63□□□□□ -0.39
LIG1-212ENST00000596549 FAM60AQ9NP50 221 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 KCND1Q9NSA2 647 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 KCND3Q9UK17 655 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 PADI1Q9ULC6 663 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 TDRKHQ9Y2W6 561 aaKnown RBP12.63□□□□□ -0.39
LIG1-212ENST00000596549 KCNMB2Q9Y691 235 aa12.63□□□□□ -0.39
LIG1-212ENST00000596549 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP12.62□□□□□ -0.39
LIG1-212ENST00000596549 CDC14CA4D256 554 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 PRMT5O14744 637 aaPredicted RBP12.62□□□□□ -0.39
LIG1-212ENST00000596549 CD3EAPO15446 510 aaKnown RBP12.62□□□□□ -0.39
LIG1-212ENST00000596549 SUV39H1O43463 412 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 CREG1O75629 220 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 CHRM5P08912 532 aaPredicted RBP12.62□□□□□ -0.39
LIG1-212ENST00000596549 CCNYL3P0C7X3 344 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 SFTPCP11686 197 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 MAGEA6P43360 314 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 HSPA14Q0VDF9 509 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 CTSL3PQ5NE16 218 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 PLEKHS1Q5SXH7 462 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 ZNF385CQ66K41 422 aaPredicted RBP12.62□□□□□ -0.39
LIG1-212ENST00000596549 FAM198BQ6UWH4 519 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 DSELQ8IZU8 1212 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 LMNTD1Q8N9Z9 388 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 LINC01555Q8NAE3 123 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 LRFN5Q96NI6 719 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 KIFC1Q9BW19 673 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 CARD6Q9BX69 1037 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 FAM117AQ9C073 453 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 KCNF1Q9H3M0 494 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 FANCEQ9HB96 536 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 PCMTD2Q9NV79 361 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 CIDEBQ9UHD4 219 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 SOX13Q9UN79 622 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 NEU2Q9Y3R4 380 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 PCDHB3Q9Y5E6 796 aa12.62□□□□□ -0.39
LIG1-212ENST00000596549 TLN1Q9Y490 2541 aaKnown RBP12.61□□□□□ -0.39
LIG1-212ENST00000596549 KRT87PA6NCN2 255 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 GOLGA8KD6RF30 607 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 GOLGA8TH3BQL2 631 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 AVILO75366 819 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 CAPN1P07384 714 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 CTSBP07858 339 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 NR1D1P20393 614 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 RPS3P23396 243 aaKnown RBP eCLIP12.61□□□□□ -0.39
LIG1-212ENST00000596549 AOAHP28039 575 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 NPY2RP49146 381 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 TTPAP49638 278 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 PLOD1Q02809 727 aaPredicted RBP12.61□□□□□ -0.39
LIG1-212ENST00000596549 GPS1Q13098 491 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 CYP1B1Q16678 543 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 TYSND1Q2T9J0 566 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 IZUMO3Q5VZ72 239 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 CAND1Q86VP6 1230 aaKnown RBP12.61□□□□□ -0.39
LIG1-212ENST00000596549 PTRH1Q86Y79 214 aaKnown RBP12.61□□□□□ -0.39
LIG1-212ENST00000596549 REXO1L1PQ8IX06 675 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 FAM20CQ8IXL6 584 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 APOBEC4Q8WW27 367 aaKnown RBP12.61□□□□□ -0.39
LIG1-212ENST00000596549 CPT1BQ92523 772 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 MR1Q95460 341 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 ABHD17AQ96GS6 310 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 IL17FQ96PD4 163 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 TTC1Q99614 292 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 CHST8Q9H2A9 424 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 IL1RAPL1Q9NZN1 696 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 BFARQ9NZS9 450 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 POLG2Q9UHN1 485 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 GNPTGQ9UJJ9 305 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 ANAPC5Q9UJX4 755 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 RUVBL2Q9Y230 463 aaKnown RBP12.61□□□□□ -0.39
LIG1-212ENST00000596549 POLHQ9Y253 713 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 JRKLQ9Y4A0 524 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 HEMK1Q9Y5R4 338 aaPredicted RBP12.61□□□□□ -0.39
LIG1-212ENST00000596549 NFS1Q9Y697 457 aa12.61□□□□□ -0.39
LIG1-212ENST00000596549 A0A0J9YY10 115 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 K7EM74 188 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 AP3B1O00203 1094 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 MEN1O00255 615 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 SLCO2B1O94956 709 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 VAPBO95292 243 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 KRT14P02533 472 aa12.6□□□□□ -0.39
LIG1-212ENST00000596549 F7P08709 466 aaPredicted RBP12.6□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms