RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 GNPDA1P46926 289 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 HMGCS1Q01581 520 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 FAM78AQ5JUQ0 283 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 HABP4Q5JVS0 413 aaKnown RBP19.24■□□□□ 0.67
CLIP3-206ENST00000593074 DPPA4Q7L190 304 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 RASGRP3Q8IV61 690 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 ST13P4Q8IZP2 240 aaPredicted RBP19.24■□□□□ 0.67
CLIP3-206ENST00000593074 BPIFB1Q8TDL5 484 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 ZNF597Q96LX8 424 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 TMEM74Q96NL1 305 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 ZSCAN5AQ9BUG6 496 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 SLC27A6Q9Y2P4 619 aa19.24■□□□□ 0.67
CLIP3-206ENST00000593074 TULP3O75386 442 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 MTX2O75431 263 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 XPAP23025 273 aaPredicted RBP19.23■□□□□ 0.67
CLIP3-206ENST00000593074 HTR1EP28566 365 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 DUSP6Q16828 381 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 C12orf40Q86WS4 652 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 ADGRG5Q8IZF4 528 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 RGL4Q8IZJ4 473 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 TIFAQ96CG3 184 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 FAM83CQ9BQN1 747 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 COQ10BQ9H8M1 238 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 ACTR8Q9H981 624 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 LRTM1Q9HBL6 345 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 UBAP1Q9NZ09 502 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 NEUROG3Q9Y4Z2 214 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 PRRC2BQ5JSZ5 2229 aaKnown RBP19.23■□□□□ 0.67
CLIP3-206ENST00000593074 TCRBV5S2A0A599 114 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 FADS2P1A8MWK0 482 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 HNRNPRO43390 633 aaKnown RBP19.23■□□□□ 0.67
CLIP3-206ENST00000593074 KRT6AP02538 564 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 KRT6BP04259 564 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 GPIP06744 558 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 HIST1H2AGP0C0S8 130 aaPredicted RBP19.23■□□□□ 0.67
CLIP3-206ENST00000593074 HIST1H2ADP20671 130 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 MMP12P39900 470 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 KRT6CP48668 564 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 AP1S2P56377 157 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 TBCELQ5QJ74 424 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 RNF220Q5VTB9 566 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 AMIGO2Q86SJ2 522 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 NPAS3Q8IXF0 933 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 FAM110BQ8TC76 370 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 SKA2Q8WVK7 121 aaPredicted RBP19.23■□□□□ 0.67
CLIP3-206ENST00000593074 PPWD1Q96BP3 646 aaKnown RBP19.23■□□□□ 0.67
CLIP3-206ENST00000593074 HIST1H2AHQ96KK5 128 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 HIST1H2AJQ99878 128 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 H2AFJQ9BTM1 129 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 RIOK2Q9BVS4 552 aaKnown RBP19.23■□□□□ 0.67
CLIP3-206ENST00000593074 SFXN1Q9H9B4 322 aa19.23■□□□□ 0.67
CLIP3-206ENST00000593074 LAMA3Q16787 3333 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 KCNE1BA0A087WTH5 132 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 AKAP10O43572 662 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 FTH1P02794 183 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 CYP2A7P20853 494 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 CLCN2P51788 898 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 PTGR1Q14914 329 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 SHHQ15465 462 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 IMPG1Q17R60 797 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 C6orf52Q5T4I8 152 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 FOXB2Q5VYV0 432 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 TECPR1Q7Z6L1 1165 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 GLB1L3Q8NCI6 653 aaPredicted RBP19.22■□□□□ 0.67
CLIP3-206ENST00000593074 SMARCD2Q92925 531 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 ASB16Q96NS5 453 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 VPS35Q96QK1 796 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 ZBTB18Q99592 522 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 C1orf109Q9NX04 203 aa19.22■□□□□ 0.67
CLIP3-206ENST00000593074 YBX2Q9Y2T7 364 aaKnown RBP19.22■□□□□ 0.67
CLIP3-206ENST00000593074 C16orf96A6NNT2 1141 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 SLCO2B1O94956 709 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 PAPLNO95428 1278 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 NFATC1O95644 943 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 FSHRP23945 695 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 OXTRP30559 389 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 DGKQP52824 942 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 PWP1Q13610 501 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 AAK1Q2M2I8 961 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 AASDHQ4L235 1098 aaPredicted RBP19.21■□□□□ 0.67
CLIP3-206ENST00000593074 CACHD1Q5VU97 1274 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 IFNEQ86WN2 208 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 LIX1Q8N485 282 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 L3MBTL4Q8NA19 623 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 ASZ1Q8WWH4 475 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 SLC13A3Q8WWT9 602 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 ELMO1Q92556 727 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 ZFYVE19Q96K21 471 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 TRAPPC9Q96Q05 1148 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 CGREF1Q99674 301 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 P2RY13Q9BPV8 354 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 ACPTQ9BZG2 426 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 FAM192AQ9GZU8 254 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 AGPAT4Q9NRZ5 378 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 AURKCQ9UQB9 309 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 PABPN1LA6NDY0 278 aaKnown RBP19.21■□□□□ 0.67
CLIP3-206ENST00000593074 QSOX1O00391 747 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 MAP3K13O43283 966 aa19.21■□□□□ 0.67
CLIP3-206ENST00000593074 MTHFD1P11586 935 aaKnown RBP19.21■□□□□ 0.67
CLIP3-206ENST00000593074 IL10P22301 178 aa19.21■□□□□ 0.67
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms