RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 TUBB2BQ9BVA1 445 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 PLAGL1Q9UM63 463 aa23.16■■□□□ 1.3
SHMT1-206ENST00000579558 PIPSLA2A3N6 862 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 DNALI1O14645 258 aaPredicted RBP23.15■■□□□ 1.3
SHMT1-206ENST00000579558 KPNA5O15131 536 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 TIAF1O95411 115 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 RPN2P04844 631 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 STAT5AP42229 794 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 CYP4F2P78329 520 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 PWWP2BQ6NUJ5 590 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 OTOAQ7RTW8 1153 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 TMEM135Q86UB9 458 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 HOOK3Q86VS8 718 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 CREG2Q8IUH2 290 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 CILP2Q8IUL8 1156 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 AGGF1Q8N302 714 aaeCLIP23.15■■□□□ 1.3
SHMT1-206ENST00000579558 BIRC8Q96P09 236 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 FCRL4Q96PJ5 515 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 EFHD1Q9BUP0 239 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 SLC12A9Q9BXP2 914 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 PITPNM3Q9BZ71 974 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 CRYL1Q9Y2S2 319 aa23.15■■□□□ 1.3
SHMT1-206ENST00000579558 H3BMM5 538 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 CHRM5P08912 532 aaPredicted RBP23.14■■□□□ 1.29
SHMT1-206ENST00000579558 TPBGLP0DKB5 382 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 ST6GAL1P15907 406 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 PTGIRP43119 386 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 THOC5Q13769 683 aaKnown RBP23.14■■□□□ 1.29
SHMT1-206ENST00000579558 ZNF470Q6ECI4 717 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 SPESP1Q6UW49 350 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 UNC5DQ6UXZ4 953 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 KLHL7Q8IXQ5 586 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 SLC45A3Q96JT2 553 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 SIGLEC10Q96LC7 697 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 FANCEQ9HB96 536 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 OR6C2Q9NZP2 312 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 VPS9D1Q9Y2B5 631 aa23.14■■□□□ 1.29
SHMT1-206ENST00000579558 ZCWPW2A0A1B0GU75 182 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 ZNF891A8MT65 544 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-206ENST00000579558 MAP3K7O43318 606 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 NIPSNAP2O75323 286 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 USP1O94782 785 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 ESR1P03372 595 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 MT-ND3P03897 115 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 PRB1P04280 392 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 PVRP15151 417 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 UGT2B7P16662 529 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 ADARP55265 1226 aaKnown RBP23.13■■□□□ 1.29
SHMT1-206ENST00000579558 PLEKHS1Q5SXH7 462 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 IZUMO3Q5VZ72 239 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 CENPUQ71F23 418 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 PCGF5Q86SE9 256 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 DCUN1D3Q8IWE4 304 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 OR8K5Q8NH50 307 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 SKA2Q8WVK7 121 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-206ENST00000579558 ZNF501Q96CX3 271 aaPredicted RBP23.13■■□□□ 1.29
SHMT1-206ENST00000579558 RUNDC3BQ96NL0 473 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 TRAPPC9Q96Q05 1148 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 KLHL25Q9H0H3 589 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 KCND1Q9NSA2 647 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 INTS10Q9NVR2 710 aaKnown RBP23.13■■□□□ 1.29
SHMT1-206ENST00000579558 SPHK1Q9NYA1 384 aa23.13■■□□□ 1.29
SHMT1-206ENST00000579558 ITGB2P05107 769 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 CCNYL3P0C7X3 344 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 PKLRP30613 574 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 PAFAH1B1P43034 410 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 LONRF1Q17RB8 773 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 SYDE1Q6ZW31 735 aaPredicted RBP23.12■■□□□ 1.29
SHMT1-206ENST00000579558 TRIM73Q86UV7 250 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 TMEM126BQ8IUX1 230 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 EXTL1Q92935 676 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 FAM136AQ96C01 138 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 OR2A14Q96R47 310 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 C20orf96Q9NUD7 363 aaPredicted RBP23.12■■□□□ 1.29
SHMT1-206ENST00000579558 IL17BQ9UHF5 180 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 CROTQ9UKG9 612 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 ATMQ13315 3056 aa23.12■■□□□ 1.29
SHMT1-206ENST00000579558 SCRG1O75711 98 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 NTRK1P04629 796 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 PKMP14618 531 aaKnown RBP23.11■■□□□ 1.29
SHMT1-206ENST00000579558 CHRM3P20309 590 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 DLSTP36957 453 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 RAB28P51157 221 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 DR1Q01658 176 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 LY6DQ14210 128 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 KYNUQ16719 465 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 ZNF789Q5FWF6 425 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 SYTL2Q9HCH5 934 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 LATS2Q9NRM7 1088 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 CIDEBQ9UHD4 219 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 PADI1Q9ULC6 663 aa23.11■■□□□ 1.29
SHMT1-206ENST00000579558 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP23.11■■□□□ 1.29
SHMT1-206ENST00000579558 ISM1B1AKI9 464 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 TMEM150CB9EJG8 249 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 S1PR4O95977 384 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 F7P08709 466 aaPredicted RBP23.1■■□□□ 1.29
SHMT1-206ENST00000579558 CTBP1Q13363 440 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 TTC23LQ6PF05 361 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 DENND6AQ8IWF6 608 aa23.1■■□□□ 1.29
SHMT1-206ENST00000579558 C19orf47Q8N9M1 422 aaKnown RBP23.1■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms