RNA–Protein interactions for RNA: ENST00000574799.5

CCDC40-212, Transcript of coiled-coil domain containing 40, humanhuman

TSL 1 (best)

Gene CCDC40, Length 3,795 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-212ENST00000574799 PXDC1Q5TGL8 231 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 NOXA1Q86UR1 476 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 TTC29Q8NA56 475 aaPredicted RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 SIMC1Q8NDZ2 872 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 OR5K1Q8NHB7 308 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 RDH12Q96NR8 316 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 ASB2Q96Q27 587 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 AMBRA1Q9C0C7 1298 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 SMOC2Q9H3U7 446 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 CRTAC1Q9NQ79 661 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 TIGARQ9NQ88 270 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 RBM22Q9NW64 420 aaKnown RBP eCLIP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 IMPAD1Q9NX62 359 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 MKLN1Q9UL63 735 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 NEU3Q9UQ49 428 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 PIN4Q9Y237 131 aaKnown RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 SCN5AQ14524 2016 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 DOCK4Q8N1I0 1966 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 VPS4BO75351 444 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 PRLP01236 227 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 PSKH1P11801 424 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 ZNF157P51786 506 aaPredicted RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 ZNF135P52742 658 aaPredicted RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 YBX1P67809 324 aaKnown RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 TP53BP2Q13625 1128 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 ZNF267Q14586 743 aaPredicted RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 QPRTQ15274 297 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 MED22Q15528 200 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 DPY19L1Q2PZI1 675 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 TRIM71Q2Q1W2 868 aaKnown RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 CACHD1Q5VU97 1274 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 AGMOQ6ZNB7 445 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 SLC22A15Q8IZD6 547 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 DPF3Q92784 378 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 SLC38A4Q969I6 547 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 MYOCQ99972 504 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 MMP28Q9H239 520 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 ANKHQ9HCJ1 492 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 KRT84Q9NSB2 600 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 TMLHEQ9NVH6 421 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 FKBP14Q9NWM8 211 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 ZNF224Q9NZL3 707 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 CD274Q9NZQ7 290 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 FZD10Q9ULW2 581 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 VPS4AQ9UN37 437 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 FAM50BQ9Y247 325 aa9.4□□□□□ -0.9
CCDC40-212ENST00000574799 OAS3Q9Y6K5 1087 aaKnown RBP9.4□□□□□ -0.9
CCDC40-212ENST00000574799 TRIM64A6NGJ6 449 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 AP3D1O14617 1153 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 RHOBTB1O94844 696 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 HTR1AP08908 422 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 HTR1EP28566 365 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 GEMP55040 296 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 HERVK_113P63132 956 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 BNC1Q01954 994 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 FBXO47Q5MNV8 452 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 ZNF678Q5SXM1 525 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 LYPD8Q6UX82 237 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 HFE2Q6ZVN8 426 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 C16orf62Q7Z3J2 963 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 CDC26Q8NHZ8 85 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 GTF2H4Q92759 462 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 FYTTD1Q96QD9 318 aaKnown RBP9.4□□□□□ -0.91
CCDC40-212ENST00000574799 VAT1Q99536 393 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 ERVK-6Q9BXR3 956 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 SAMHD1Q9Y3Z3 626 aaKnown RBP9.4□□□□□ -0.91
CCDC40-212ENST00000574799 PCDHA9Q9Y5H5 950 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 SNX10Q9Y5X0 201 aa9.4□□□□□ -0.91
CCDC40-212ENST00000574799 SCO2O43819 266 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 SSX4O60224 188 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 DIRAS1O95057 198 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 HPRP00739 348 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 CNPP09543 421 aaKnown RBP9.39□□□□□ -0.91
CCDC40-212ENST00000574799 SLC2A4P14672 509 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 HTR3AP46098 478 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 TM4SF4P48230 202 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 CXCR3P49682 368 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 PGFP49763 221 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 IL18R1Q13478 541 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 EIF4EBP2Q13542 120 aaPredicted RBP9.39□□□□□ -0.91
CCDC40-212ENST00000574799 PCBP1Q15365 356 aaKnown RBP eCLIP9.39□□□□□ -0.91
CCDC40-212ENST00000574799 TAF1CQ15572 869 aaPredicted RBP9.39□□□□□ -0.91
CCDC40-212ENST00000574799 BTBD16Q32M84 506 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 SLC25A52Q3SY17 297 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 IRAK1BP1Q5VVH5 260 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 PLET1Q6UQ28 207 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 IL27RAQ6UWB1 636 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 LINC00299Q6ZSB3 139 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 LPPQ93052 612 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 GFM1Q96RP9 751 aaKnown RBP9.39□□□□□ -0.91
CCDC40-212ENST00000574799 BCL7BQ9BQE9 202 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 SLC30A2Q9BRI3 323 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 GSTO2Q9H4Y5 243 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 PDP1Q9P0J1 537 aaPredicted RBP9.39□□□□□ -0.91
CCDC40-212ENST00000574799 RCOR3Q9P2K3 495 aaPredicted RBP9.39□□□□□ -0.91
CCDC40-212ENST00000574799 PCDHB14Q9Y5E9 798 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 ELOVL7A1L3X0 281 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 HNRNPCL2B2RXH8 293 aa9.39□□□□□ -0.91
CCDC40-212ENST00000574799 UBFD1O14562 309 aaKnown RBP9.39□□□□□ -0.91
CCDC40-212ENST00000574799 GGT5P36269 586 aa9.39□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 65.9 ms