RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 LIN7AO14910 233 aaPredicted RBP20.35■□□□□ 0.85
VPS53-216ENST00000574029 HCRTR1O43613 425 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 OR2B3O76000 313 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 TJP3O95049 919 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 DDAH2O95865 285 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 ACADLP28330 430 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 ZNF75DP51815 510 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 RWDD2BP57060 319 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 RAPSNQ13702 412 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 PARP6Q2NL67 630 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 AADACL2Q6P093 401 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 TRIM73Q86UV7 250 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 HOOK3Q86VS8 718 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 STYXQ8WUJ0 223 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 N4BP2L2Q92802 583 aaPredicted RBP20.35■□□□□ 0.85
VPS53-216ENST00000574029 FER1L6-AS2Q96M78 137 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 GBP5Q96PP8 586 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 SPRTNQ9H040 489 aaPredicted RBP20.35■□□□□ 0.85
VPS53-216ENST00000574029 CASS4Q9NQ75 786 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 CCDC88CQ9P219 2028 aa20.35■□□□□ 0.85
VPS53-216ENST00000574029 SPTAN1Q13813 2472 aaKnown RBP20.35■□□□□ 0.85
VPS53-216ENST00000574029 CHRM5P08912 532 aaPredicted RBP20.34■□□□□ 0.85
VPS53-216ENST00000574029 TPBGLP0DKB5 382 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 TPH1P17752 444 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 PSMA3P25788 255 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 CYLC1P35663 651 aaPredicted RBP20.34■□□□□ 0.85
VPS53-216ENST00000574029 NSG1P42857 185 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 DEFB110Q30KQ9 67 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 PLEKHN1Q494U1 663 aaPredicted RBP20.34■□□□□ 0.85
VPS53-216ENST00000574029 MLIPQ5VWP3 458 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 TBC1D21Q8IYX1 336 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 PROKR1Q8TCW9 393 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 ALG3Q92685 438 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 LRRC40Q9H9A6 602 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 SPHK1Q9NYA1 384 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 SMARCAL1Q9NZC9 954 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 POLG2Q9UHN1 485 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 ASF1AQ9Y294 204 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 PRSS21Q9Y6M0 314 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 NBPF19A0A087WUL8 3843 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 SEC16AO15027 2179 aa20.34■□□□□ 0.85
VPS53-216ENST00000574029 RCCD1A6NED2 376 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 QSOX1O00391 747 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 METTL18O95568 372 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 IGHEP01854 428 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 CD63P08962 238 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 CETN2P41208 172 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 FOLR3P41439 243 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 DCDP81605 110 aaKnown RBP20.33■□□□□ 0.85
VPS53-216ENST00000574029 ITIH4Q14624 930 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 DCAF10Q5QP82 559 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 C1orf189Q5VU69 101 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 IGFL3Q6UXB1 125 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 PACS1Q6VY07 963 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 ARHGEF18Q6ZSZ5 1173 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 TMTC1Q8IUR5 882 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 PRR7Q8TB68 274 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 SNRNP40Q96DI7 357 aaKnown RBP20.33■□□□□ 0.85
VPS53-216ENST00000574029 C19orf60Q96EN9 201 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 OR6C2Q9NZP2 312 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 MAP10Q9P2G4 905 aa20.33■□□□□ 0.85
VPS53-216ENST00000574029 GPN3Q9UHW5 284 aaPredicted RBP20.33■□□□□ 0.85
VPS53-216ENST00000574029 PTRH2Q9Y3E5 179 aaKnown RBP20.33■□□□□ 0.85
VPS53-216ENST00000574029 SPTBN1Q01082 2364 aaKnown RBP20.32■□□□□ 0.84
VPS53-216ENST00000574029 A0A0J9YY10 115 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 SLC5A10A0PJK1 596 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 MROH6A6NGR9 719 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 BHMG1C9JSJ3 638 aaPredicted RBP20.32■□□□□ 0.84
VPS53-216ENST00000574029 ZSCAN9O15535 394 aaPredicted RBP20.32■□□□□ 0.84
VPS53-216ENST00000574029 KRT86O43790 486 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 FTH1P02794 183 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 CTSBP07858 339 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 POU6F1Q14863 301 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 MYBPC3Q14896 1274 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 KYNUQ16719 465 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 TLDC1Q6P9B6 456 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 IQCKQ8N0W5 287 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 DNAJC22Q8N4W6 341 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 CLEC1AQ8NC01 280 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 OR2Y1Q8NGV0 311 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 OR5K2Q8NHB8 316 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 ELMO1Q92556 727 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 AP1M1Q9BXS5 423 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 IFT80Q9P2H3 777 aaPredicted RBP20.32■□□□□ 0.84
VPS53-216ENST00000574029 DHCR7Q9UBM7 475 aaKnown RBP20.32■□□□□ 0.84
VPS53-216ENST00000574029 B3GNT3Q9Y2A9 372 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 DUSP10Q9Y6W6 482 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 NUP210LQ5VU65 1888 aa20.32■□□□□ 0.84
VPS53-216ENST00000574029 WIPF3A6NGB9 483 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 BTNL10A8MVZ5 291 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 PEX12O00623 359 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 KLHL41O60662 606 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 CNOT3O75175 753 aaKnown RBP20.31■□□□□ 0.84
VPS53-216ENST00000574029 CBX6O95503 412 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 AP2A1O95782 977 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 MSNP26038 577 aaKnown RBP20.31■□□□□ 0.84
VPS53-216ENST00000574029 SOX8P57073 446 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 PLOD1Q02809 727 aaPredicted RBP20.31■□□□□ 0.84
VPS53-216ENST00000574029 BRD3Q15059 726 aa20.31■□□□□ 0.84
VPS53-216ENST00000574029 SLC5A12Q1EHB4 618 aa20.31■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms