RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 MYL6P60660 151 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 ZXDAP98168 799 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 SIGLEC14Q08ET2 396 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 CUL2Q13617 745 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 CSHL1Q14406 222 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 TPD52L1Q16890 204 aaPredicted RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 SOWAHAQ2M3V2 549 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 USP39Q53GS9 565 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 SPDYAQ5MJ70 313 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 CES4AQ5XG92 561 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 KRT39Q6A163 491 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 SLC25A24Q6NUK1 477 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 CDC73Q6P1J9 531 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 VSTM1Q6UX27 236 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 RBPMS2Q6ZRY4 209 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 HTR3DQ70Z44 454 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 HOOK3Q86VS8 718 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 PALM2Q8IXS6 379 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 MLKLQ8NB16 471 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 TMEM116Q8NCL8 245 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 TNIP2Q8NFZ5 429 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 FGF13Q92913 245 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 SCAMP4Q969E2 229 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 PSMG2Q969U7 264 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 CEP295NLQ96MC4 621 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 KCNK16Q96T55 309 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 CD180Q99467 661 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 SEPT5Q99719 369 aaPredicted RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 FERMT1Q9BQL6 677 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 TBCDQ9BTW9 1192 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 TRIM7Q9C029 511 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 SLITRK6Q9H5Y7 841 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 FAM124BQ9H5Z6 455 aaPredicted RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 EPHX3Q9H6B9 360 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 FSCN3Q9NQT6 498 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 ATAD3AQ9NVI7 634 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 TRPM5Q9NZQ8 1165 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 LRIT1Q9P2V4 623 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 DNMT3BQ9UBC3 853 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 ARMCX3Q9UH62 379 aaPredicted RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 AMACRQ9UHK6 382 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 MAN1B1Q9UKM7 699 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 RPH3AQ9Y2J0 694 aaPredicted RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 PTRH2Q9Y3E5 179 aaKnown RBP6.06□□□□□ -1.44
VPS53-212ENST00000572259 JRKLQ9Y4A0 524 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 YIPF1Q9Y548 306 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 ENTPD2Q9Y5L3 495 aa6.06□□□□□ -1.44
VPS53-212ENST00000572259 A0A1W2PQM1 296 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 SYCE3A1L190 88 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 PRSS29PA6NIE9 313 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 CD3EAPO15446 510 aaKnown RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 PRSS23O95084 383 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 ADCY5O95622 1261 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 DDAH2O95865 285 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 CHEK2O96017 543 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 HLA-DRAP01903 254 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 C1SP09871 688 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 TPBGLP0DKB5 382 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 CCDC192P0DO97 292 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 HAPLN1P10915 354 aaPredicted RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 COX7A2P14406 83 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 GCSHP23434 173 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 DDX6P26196 483 aaKnown RBP eCLIP6.05□□□□□ -1.44
VPS53-212ENST00000572259 TNFRSF8P28908 595 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 AVPR2P30518 371 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 TTKP33981 857 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 MAGEA11P43364 429 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 GCLMP48507 274 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 UFM1P61960 85 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 YWHAEP62258 255 aaKnown RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 RUNX1T1Q06455 604 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 BOP1Q14137 746 aaKnown RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 KCNAB1Q14722 419 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 PDK1Q15118 436 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 CAMK4Q16566 473 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 HFEQ30201 348 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 CFAP221Q4G0U5 840 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 ZCWPW2Q504Y3 356 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 FAM102AQ5T9C2 384 aaPredicted RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 ANKRD40Q6AI12 368 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 ABLIM2Q6H8Q1 611 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 FAM171BQ6P995 826 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 PARS2Q7L3T8 475 aaKnown RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 UNC93AQ86WB7 457 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 ARHGAP12Q8IWW6 846 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 MINDY1Q8N5J2 469 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 FBXL13Q8NEE6 735 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 TMIEQ8NEW7 156 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 OR10T2Q8NGX3 314 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 MYCBPAPQ8TBZ2 947 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 SLC2A12Q8TD20 617 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 NELFBQ8WX92 580 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 PRCCQ92733 491 aaPredicted RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 DVL3Q92997 716 aaPredicted RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 KLHL29Q96CT2 875 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 TMCO6Q96DC7 493 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 MCRS1Q96EZ8 462 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 MARS2Q96GW9 593 aaKnown RBP6.05□□□□□ -1.44
VPS53-212ENST00000572259 C5orf34Q96MH7 638 aa6.05□□□□□ -1.44
VPS53-212ENST00000572259 KLHL32Q96NJ5 620 aa6.05□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms