RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TMPRSS15P98073 1019 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 DSG2Q14126 1118 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 ZIC1Q15915 447 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 IFI16Q16666 785 aaKnown RBP17.34■□□□□ 0.37
CLK3-227ENST00000570296 LONRF2Q1L5Z9 754 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 Q71RC1 249 aaPredicted RBP17.34■□□□□ 0.37
CLK3-227ENST00000570296 DMRTC2Q8IXT2 367 aaPredicted RBP17.34■□□□□ 0.37
CLK3-227ENST00000570296 BRIX1Q8TDN6 353 aaKnown RBP17.34■□□□□ 0.37
CLK3-227ENST00000570296 ALPK1Q96QP1 1244 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 DMRTA2Q96SC8 542 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 AGPAT1Q99943 283 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 VKORC1Q9BQB6 163 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 CCM2Q9BSQ5 444 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 SLC24A3Q9HC58 644 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 IRAK4Q9NWZ3 460 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 ST6GALNAC2Q9UJ37 374 aa17.34■□□□□ 0.37
CLK3-227ENST00000570296 MFSD11O43934 449 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 WDPCPO95876 746 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 PRR35P0CG20 571 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 ACPPP15309 386 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 ALAS2P22557 587 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 GCGRP47871 477 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 ADAM8P78325 824 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 FNBP1LQ5T0N5 605 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 ZDHHC20Q5W0Z9 365 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 PPP1R2P3Q6NXS1 205 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 AMIGO1Q86WK6 493 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 ADGRF3Q8IZF5 1079 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 AGAP11Q8TF27 550 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 HSPH1Q92598 858 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 ARSGQ96EG1 525 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 SOX17Q9H6I2 414 aaPredicted RBP17.33■□□□□ 0.36
CLK3-227ENST00000570296 IL26Q9NPH9 171 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 NPDC1Q9NQX5 325 aaPredicted RBP17.33■□□□□ 0.36
CLK3-227ENST00000570296 MXRA5Q9NR99 2828 aa17.33■□□□□ 0.36
CLK3-227ENST00000570296 MAP2K7O14733 419 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 SLCO2B1O94956 709 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 ZWINTO95229 277 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 F10P00742 488 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 SERPINA7P05543 415 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 CARSP49589 748 aaKnown RBP17.32■□□□□ 0.36
CLK3-227ENST00000570296 MEOX1P50221 254 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 ARSFP54793 590 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 PMP22Q01453 160 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 SARM1Q6SZW1 724 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 SHISA6Q6ZSJ9 500 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 COX15Q7KZN9 410 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 TRIM7Q9C029 511 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 CLSTN2Q9H4D0 955 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 PCDH18Q9HCL0 1135 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 BPIFA1Q9NP55 256 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP17.32■□□□□ 0.36
CLK3-227ENST00000570296 PLCL2Q9UPR0 1127 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 TLN2Q9Y4G6 2542 aa17.32■□□□□ 0.36
CLK3-227ENST00000570296 OR5H15A6NDH6 313 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 BMP10O95393 424 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 HMGCLP35914 325 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 GPRC6AQ5T6X5 926 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 TMEM198Q66K66 360 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 HIBCHQ6NVY1 386 aaPredicted RBP17.31■□□□□ 0.36
CLK3-227ENST00000570296 TTLL10Q6ZVT0 673 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 TRIM73Q86UV7 250 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 DNAJC22Q8N4W6 341 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 SIRT6Q8N6T7 355 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 OR52E1Q8NGJ3 308 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 FERD3LQ96RJ6 166 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 SMR3AQ99954 134 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 CRB3Q9BUF7 120 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 DNAJB12Q9NXW2 375 aaKnown RBP17.31■□□□□ 0.36
CLK3-227ENST00000570296 CTSFQ9UBX1 484 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 EDARQ9UNE0 448 aa17.31■□□□□ 0.36
CLK3-227ENST00000570296 VSTM2BA6NLU5 285 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 ADAM10O14672 748 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 AURKAO14965 403 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 EPHB6O15197 1021 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 C8BP07358 591 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 UQCRHP07919 91 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 RARAP10276 462 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 ABOP16442 354 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 MSX1P28360 303 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 TFF3Q07654 80 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 CCDC122Q5T0U0 273 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 NDUFAF7Q7L592 441 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 NUDT8Q8WV74 236 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 RBM41Q96IZ5 413 aaKnown RBP17.3■□□□□ 0.36
CLK3-227ENST00000570296 C18orf12Q96KH6 178 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 LINC00615Q96LM1 132 aaPredicted RBP17.3■□□□□ 0.36
CLK3-227ENST00000570296 FAM8A1Q9UBU6 413 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 PPT2Q9UMR5 302 aa17.3■□□□□ 0.36
CLK3-227ENST00000570296 HRNRQ86YZ3 2850 aaPredicted RBP17.3■□□□□ 0.36
CLK3-227ENST00000570296 NSG1A0A0A6YYJ2 146 aa17.29■□□□□ 0.36
CLK3-227ENST00000570296 DSCR3O14972 297 aa17.29■□□□□ 0.36
CLK3-227ENST00000570296 UGT1A9O60656 530 aa17.29■□□□□ 0.36
CLK3-227ENST00000570296 WFS1O76024 890 aa17.29■□□□□ 0.36
CLK3-227ENST00000570296 TSPAN12O95859 305 aa17.29■□□□□ 0.36
CLK3-227ENST00000570296 POLBP06746 335 aa17.29■□□□□ 0.36
CLK3-227ENST00000570296 HOXD4P09016 255 aaPredicted RBP17.29■□□□□ 0.36
CLK3-227ENST00000570296 UGT2B7P16662 529 aa17.29■□□□□ 0.36
CLK3-227ENST00000570296 UGT1A6P19224 532 aa17.29■□□□□ 0.36
CLK3-227ENST00000570296 MSH3P20585 1137 aa17.29■□□□□ 0.36
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms