RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 ALYREFQ86V81 257 aaKnown RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 TRIM69Q86WT6 500 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 GALNT13Q8IUC8 556 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TRAPPC5Q8IUR0 188 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 RASGRP3Q8IV61 690 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CFAP206Q8IYR0 622 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TBC1D3Q8IZP1 549 aaPredicted RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 GJD3Q8N144 294 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 OXR1Q8N573 874 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TRPC4APQ8TEL6 797 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 AGAP11Q8TF27 550 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 SETD7Q8WTS6 366 aaKnown RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 RAD51AP1Q96B01 352 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 FAM136AQ96C01 138 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 C19orf60Q96EN9 201 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 FAM161BQ96MY7 647 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 MIPEPQ99797 713 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 TIMM29Q9BSF4 260 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CCDC106Q9BWC9 280 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 NUF2Q9BZD4 464 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 NMUR2Q9GZQ4 415 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 PCBD2Q9H0N5 130 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 PCED1AQ9H1Q7 454 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 OR2AG1Q9H205 316 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 ZNF395Q9H8N7 513 aaPredicted RBP7.79□□□□□ -1.16
VPS39-213ENST00000570062 IPPKQ9H8X2 491 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 ARHGEF3Q9NR81 526 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 BCAP29Q9UHQ4 241 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 SNX6Q9UNH7 406 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 DUSP12Q9UNI6 340 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 DMTF1Q9Y222 760 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 ITM2BQ9Y287 266 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 HS3ST3A1Q9Y663 406 aa7.79□□□□□ -1.16
VPS39-213ENST00000570062 CDH23Q9H251 3354 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 A0A1W2PQU0 124 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 SERTM1A2A2V5 107 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 NCF1BA6NI72 391 aaPredicted RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 OR2AG2A6NM03 316 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 NCF1CA8MVU1 366 aaPredicted RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 TNFRSF10CO14798 259 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 INPP4BO15327 924 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 GPR39O43194 453 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 RGS14O43566 566 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 PI15O43692 258 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 SGTAO43765 313 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 ADAM23O75077 832 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 SIX3O95343 332 aaPredicted RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 CLDN9O95484 217 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 APBB3O95704 486 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 PAK4O96013 591 aaPredicted RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 SOD1P00441 154 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 NCF1P14598 390 aaPredicted RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 IDO1P14902 403 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 LBPP18428 481 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 HMOX2P30519 316 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 AKT2P31751 481 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 WASP42768 502 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 MRPL19P49406 292 aaKnown RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 CCR5P51681 352 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 HK3P52790 923 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 PGGT1BP53609 377 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 ADPRHP54922 357 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 CDH13P55290 713 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 CTBSQ01459 385 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 BTKQ06187 659 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 TUBB3Q13509 450 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 LAPTM5Q13571 262 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 RPS6KA2Q15349 733 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 PDCD2Q16342 344 aaPredicted RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 LSM12Q3MHD2 195 aaKnown RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 C6orf163Q5TEZ5 329 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 LIPJQ5W064 366 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 OGFOD2Q6N063 350 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 ASRGL1Q7L266 308 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 HEATR4Q86WZ0 1026 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 DCP2Q8IU60 420 aaKnown RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 UBALD2Q8IYN6 164 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 TEX9Q8N6V9 391 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 PNPLA1Q8N8W4 532 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 METTL6Q8TCB7 284 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 LKAAEAR1Q8TD35 194 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 TWIST2Q8WVJ9 160 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 UBE2E3Q969T4 207 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 REPS1Q96D71 796 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 MRGPRX1Q96LB2 322 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 PPP3R2Q96LZ3 170 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 INSM2Q96T92 566 aaPredicted RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 CDX2Q99626 313 aaPredicted RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 EBF4Q9BQW3 602 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 RAB11FIP5Q9BXF6 653 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 OSBPL6Q9BZF3 934 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 UNKQ9C0B0 810 aaKnown RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 MKRN2Q9H000 416 aaKnown RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 NOL11Q9H8H0 719 aaKnown RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 EFCAB1Q9HAE3 211 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 SEMA4BQ9NPR2 832 aaPredicted RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 DNAJC11Q9NVH1 559 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 NMRK1Q9NWW6 199 aa7.78□□□□□ -1.16
VPS39-213ENST00000570062 UTP6Q9NYH9 597 aaKnown RBP7.78□□□□□ -1.16
VPS39-213ENST00000570062 ATXN10Q9UBB4 475 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 76 ms