RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 SPNS1Q9H2V7 528 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 ERVK-18Q9QC07 812 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 PCDHB3Q9Y5E6 796 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CSNK1G3Q9Y6M4 447 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CCDC154A6NI56 674 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 LOC110117498-PIK3R3F6TDL0 507 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 ADAMTS4O75173 837 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 WBP4O75554 376 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 POP7O75817 140 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 ENDOD1O94919 500 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 GABARAPO95166 117 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CHRNA1P02708 482 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CSF2P04141 144 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 RPS17P08708 135 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 ACADMP11310 421 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 RPS9P46781 194 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 FNTBP49356 437 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 HADHQ16836 314 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 MACC1Q6ZN28 852 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 RASSF6Q6ZTQ3 369 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 CHMP1BQ7LBR1 199 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 ZC3HC1Q86WB0 502 aaKnown RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 DMRTC2Q8IXT2 367 aaPredicted RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 RCOR2Q8IZ40 523 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 TMCO6Q96DC7 493 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 LGALS12Q96DT0 336 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 POM121Q96HA1 1249 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 APOL4Q9BPW4 351 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 TM9SF3Q9HD45 589 aa10.64□□□□□ -0.71
CLK3-226ENST00000569406 PRMT8Q9NR22 394 aaPredicted RBP10.64□□□□□ -0.71
CLK3-226ENST00000569406 A0A0A6YYJ9 748 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 MTMR11A4FU01 709 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 GRAP2O75791 330 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 INSRRP14616 1297 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 ARF4P18085 180 aaPredicted RBP10.63□□□□□ -0.71
CLK3-226ENST00000569406 FASP25445 335 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 PREPP48147 710 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 PSME3P61289 254 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 ZNF45Q02386 682 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 CDH17Q12864 832 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 SKIV2LQ15477 1246 aaKnown RBP10.63□□□□□ -0.71
CLK3-226ENST00000569406 FSCN1Q16658 493 aaKnown RBP10.63□□□□□ -0.71
CLK3-226ENST00000569406 ZNF699Q32M78 642 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 OR7E24Q6IFN5 339 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 EMC1Q8N766 993 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 TUBGCP3Q96CW5 907 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 CPB2Q96IY4 423 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 MS4A4AQ96JQ5 239 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 NECTIN3Q9NQS3 549 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 CHRAC1Q9NRG0 131 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 COX16Q9P0S2 106 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 LAMA3Q16787 3333 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 TCRBV7S3A2A0A539 114 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 POM121BA6NF01 834 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 HS6ST1O60243 411 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 APOL3O95236 402 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 MT-ND1P03886 318 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 DNTTP04053 509 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 APRTP07741 180 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 HBQ1P09105 142 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 TXNP10599 105 aaKnown RBP10.63□□□□□ -0.71
CLK3-226ENST00000569406 SHMT2P34897 504 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 HNF4AP41235 474 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 RAB13P51153 203 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 PGDP52209 483 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 POU4F1Q01851 419 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 GRK1Q15835 563 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 RFX4Q33E94 735 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 PKDCCQ504Y2 493 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 TFDP3Q5H9I0 405 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 ZMAT1Q5H9K5 638 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 LGSNQ5TDP6 509 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 ANKRD22Q5VYY1 191 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 ZYG11AQ6WRX3 759 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 ARMCX2Q7L311 632 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 PACRGLQ8N7B6 248 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 RP9Q8TA86 221 aaKnown RBP10.63□□□□□ -0.71
CLK3-226ENST00000569406 SERPINB11Q96P15 392 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 DHRS4Q9BTZ2 278 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 TEX12Q9BXU0 123 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 DCSTAMPQ9H295 470 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 ZCCHC4Q9H5U6 513 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 CRLF2Q9HC73 371 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 IMPAD1Q9NX62 359 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 OPTCQ9UBM4 332 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 CTSFQ9UBX1 484 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 CPA4Q9UI42 421 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 TSC2P49815 1807 aa10.63□□□□□ -0.71
CLK3-226ENST00000569406 TRIP12Q14669 1992 aaPredicted RBP10.63□□□□□ -0.71
CLK3-226ENST00000569406 A0A087WZ62 844 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 LY86O95711 162 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 SNAI1O95863 264 aaPredicted RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 LGALS2P05162 132 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 KLK3P07288 261 aaPredicted RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 LTA4HP09960 611 aaKnown RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 STAG3L1P0CL83 205 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 HOXD8P13378 290 aaPredicted RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 AZGP1P25311 298 aaKnown RBP10.62□□□□□ -0.71
CLK3-226ENST00000569406 ACADLP28330 430 aa10.62□□□□□ -0.71
CLK3-226ENST00000569406 POU5F1BQ06416 359 aa10.62□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms