RNA–Protein interactions for RNA: ENST00000568232.1

CLK3-222, Transcript of CDC like kinase 3, human

Gene CLK3, Length 958 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-222	ENST00000568232	OVCH1	Q7RTY7	1134 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	CFAP206	Q8IYR0	622 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	AMER2	Q8N7J2	671 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	PHC3	Q8NDX5	983 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	DDHD1	Q8NEL9	900 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	ANKRD20A12P	Q8NF67	263 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	OR52E1	Q8NGJ3	308 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	OR2L2	Q8NH16	312 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	PSMF1	Q92530	271 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	FATE1	Q969F0	183 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	REPIN1	Q9BWE0	567 aa	Known RBP	11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	ZCCHC2	Q9C0B9	1178 aa	Known RBP	11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	CSTF2T	Q9H0L4	616 aa	Known RBP eCLIP	11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	CXXC4	Q9H2H0	198 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	HAUS2	Q9NVX0	235 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	MYO1A	Q9UBC5	1043 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	TNFRSF10D	Q9UBN6	386 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	CNTRL	Q7Z7A1	2325 aa		11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	PRRC2A	P48634	2157 aa	Known RBP	11.3	□□□□□ -0.6
CLK3-222	ENST00000568232	NCOA6	Q14686	2063 aa	Predicted RBP	11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	C17orf113	A0A1B0GUU1	675 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	BUD23	O43709	281 aa	Known RBP	11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	EEF1G	P26641	437 aa	Known RBP	11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	SOX11	P35716	441 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	SLC25A11	Q02978	314 aa	Known RBP	11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	GBE1	Q04446	702 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	LTB	Q06643	244 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	SLC10A2	Q12908	348 aa	Predicted RBP	11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	PRKG2	Q13237	762 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	PPP2R5E	Q16537	467 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	TLDC1	Q6P9B6	456 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	SPESP1	Q6UW49	350 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	TTLL10	Q6ZVT0	673 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	AMIGO1	Q86WK6	493 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	SIRT6	Q8N6T7	355 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	CCNY	Q8ND76	341 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	DNAJB8	Q8NHS0	232 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	SPATA22	Q8NHS9	363 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	BRIX1	Q8TDN6	353 aa	Known RBP	11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	HAS2	Q92819	552 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	C8orf44	Q96CB5	159 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	RBM41	Q96IZ5	413 aa	Known RBP	11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	SYT11	Q9BT88	431 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	GPAM	Q9HCL2	828 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	DLL4	Q9NR61	685 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	CCM2L	Q9NUG4	571 aa	Predicted RBP	11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	CTSF	Q9UBX1	484 aa		11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	RPH3A	Q9Y2J0	694 aa	Predicted RBP	11.29	□□□□□ -0.6
CLK3-222	ENST00000568232	GAPDHS	O14556	408 aa	Predicted RBP	11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	FTL	P02792	175 aa	Predicted RBP	11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	UGT2B7	P16662	529 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	MSH3	P20585	1137 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	AKT1	P31749	480 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	HMGCL	P35914	325 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	KRT31	Q15323	416 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	LONRF1	Q17RB8	773 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	LONRF2	Q1L5Z9	754 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	ATP13A4	Q4VNC1	1196 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	C3P1	Q6ZMU1	363 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	HOOK3	Q86VS8	718 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	TMEM200A	Q86VY9	491 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	DNAJC22	Q8N4W6	341 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	DTWD1	Q8N5C7	304 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	METTL27	Q8N6F8	245 aa	Predicted RBP	11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	CHDH	Q8NE62	594 aa	Predicted RBP	11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	NEK11	Q8NG66	645 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	FKBP10	Q96AY3	582 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	IMP4	Q96G21	291 aa	Known RBP	11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	MAGED4	Q96JG8	741 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	BTBD6	Q96KE9	485 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	SMR3A	Q99954	134 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	FOXC2	Q99958	501 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	XPO4	Q9C0E2	1151 aa	Known RBP	11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	TSPAN10	Q9H1Z9	355 aa	Predicted RBP	11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	TFB2M	Q9H5Q4	396 aa	Known RBP	11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	WDR54	Q9H977	334 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	MRM3	Q9HC36	420 aa	Known RBP	11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	CBX8	Q9HC52	389 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	SPHK1	Q9NYA1	384 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	ZNF835	Q9Y2P0	537 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	HEBP2	Q9Y5Z4	205 aa		11.28	□□□□□ -0.6
CLK3-222	ENST00000568232	GLYATL1P3	A0A0U1RQE8	302 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	KIAA1324L	A8MWY0	1029 aa	Predicted RBP	11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	SGTA	O43765	313 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	PRAMEF2	O60811	474 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	WDPCP	O95876	746 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	HP	P00738	406 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	ALB	P02768	609 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	CELA2A	P08217	269 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	PRR35	P0CG20	571 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	SPAM1	P38567	509 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	GCGR	P47871	477 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	OR1D4	P47884	311 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	ARSE	P51690	589 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	DPYSL3	Q14195	570 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	PTPRCAP	Q14761	206 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	SLC5A12	Q1EHB4	618 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	FKBP15	Q5T1M5	1219 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	CCDC183	Q5T5S1	534 aa		11.27	□□□□□ -0.61
CLK3-222	ENST00000568232	TAOK1	Q7L7X3	1001 aa		11.27	□□□□□ -0.61

Retrieved 100 of 20,778 RNA–protein pairs in 55.7 ms