RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 ZNF385CQ66K41 422 aaPredicted RBP15.54■□□□□ 0.08
CLN3-229ENST00000567963 NAPRTQ6XQN6 538 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 HOOK3Q86VS8 718 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 ATCAYQ86WG3 371 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 GPR135Q8IZ08 494 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 C19orf47Q8N9M1 422 aaKnown RBP15.54■□□□□ 0.08
CLN3-229ENST00000567963 OR5K2Q8NHB8 316 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 HDAC10Q969S8 669 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 TCTN2Q96GX1 697 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 SPHK1Q9NYA1 384 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 OR6C2Q9NZP2 312 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 CAPN6Q9Y6Q1 641 aa15.54■□□□□ 0.08
CLN3-229ENST00000567963 HEATR9A2RTY3 570 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 TTLL8A6PVC2 850 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 OR1I1O60431 355 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 SUN1O94901 812 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 GAS8O95995 478 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 GOT2P00505 430 aaKnown RBP15.53■□□□□ 0.08
CLN3-229ENST00000567963 CHRM5P08912 532 aaPredicted RBP15.53■□□□□ 0.08
CLN3-229ENST00000567963 AGXTP21549 392 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 FDFT1P37268 417 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 GRIA1P42261 906 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 GABRA4P48169 554 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 NCF4Q15080 339 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 ZIC1Q15915 447 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 MED25Q71SY5 747 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 TRIM73Q86UV7 250 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 FAM26EQ8N5C1 309 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 RNF10Q8N5U6 811 aaKnown RBP15.53■□□□□ 0.08
CLN3-229ENST00000567963 ZBTB2Q8N680 514 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 FLVCR1-AS1Q8TAF5 88 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 N4BP2L2Q92802 583 aaPredicted RBP15.53■□□□□ 0.08
CLN3-229ENST00000567963 RANBP9Q96S59 729 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 TTC1Q99614 292 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 CHRNA10Q9GZZ6 450 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 SLC2A6Q9UGQ3 507 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 RIMKLBQ9ULI2 386 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 TDRKHQ9Y2W6 561 aaKnown RBP15.53■□□□□ 0.08
CLN3-229ENST00000567963 PCDHGB7Q9Y5F8 929 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 MAST4O15021 2626 aa15.53■□□□□ 0.08
CLN3-229ENST00000567963 HCRTR1O43613 425 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 LIASO43766 372 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 IFNB1P01574 187 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 ADRA1DP25100 572 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 NADK2Q4G0N4 442 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 SYTL3Q4VX76 610 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 TSTD2Q5T7W7 516 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 GAS2L3Q86XJ1 694 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 TMEM102Q8N9M5 508 aaPredicted RBP15.52■□□□□ 0.08
CLN3-229ENST00000567963 FDCSPQ8NFU4 85 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 OR4L1Q8NH43 312 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 ZNF778Q96MU6 729 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 DHRS4Q9BTZ2 278 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 FRMD8P1Q9BZ68 369 aaPredicted RBP15.52■□□□□ 0.08
CLN3-229ENST00000567963 SPRTNQ9H040 489 aaPredicted RBP15.52■□□□□ 0.08
CLN3-229ENST00000567963 IMPACTQ9P2X3 320 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 ZNF451Q9Y4E5 1061 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 AP1M2Q9Y6Q5 423 aa15.52■□□□□ 0.08
CLN3-229ENST00000567963 A0A0J9YY10 115 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 C9J4A7 227 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 ZNF185O15231 689 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 KLF7O75840 302 aaPredicted RBP15.52■□□□□ 0.07
CLN3-229ENST00000567963 OR2B3O76000 313 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 ACVR1Q04771 509 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 DEFB110Q30KQ9 67 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 SEL1L2Q5TEA6 688 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 RHBDD2Q6NTF9 364 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 AFTPHQ6ULP2 937 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 PPP1R21Q6ZMI0 780 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 CPT1CQ8TCG5 803 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 SGSM3Q96HU1 749 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 PLAGL1Q9UM63 463 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 ZNF148Q9UQR1 794 aa15.52■□□□□ 0.07
CLN3-229ENST00000567963 CCDC88CQ9P219 2028 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 FER1L5A0AVI2 2057 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 E7EVH7 732 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 F8W8V4 182 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 KDM1AO60341 852 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 VPS4BO75351 444 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 CBSLP0DN79 551 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 ETS1P14921 441 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 CCR7P32248 378 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 CBSP35520 551 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 RRADP55042 308 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 KIR2DS3Q14952 304 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 FASTKD1Q53R41 847 aaKnown RBP15.51■□□□□ 0.07
CLN3-229ENST00000567963 ZNF534Q76KX8 674 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 NLRP9Q7RTR0 991 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 PRUNE1Q86TP1 453 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 SLC22A15Q8IZD6 547 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 GLIS1Q8NBF1 620 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 OR6P1Q8NGX9 317 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 C1orf54Q8WWF1 131 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 C17orf62Q9BQA9 187 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 NUDT9Q9BW91 350 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 AP1M1Q9BXS5 423 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 CASS4Q9NQ75 786 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 RAB6BQ9NRW1 208 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 VPS4AQ9UN37 437 aa15.51■□□□□ 0.07
CLN3-229ENST00000567963 CDYLQ9Y232 598 aa15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms