RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 PIWIL2Q8TC59 973 aaKnown RBP29.79■■■□□ 2.36
CTCF-203ENST00000566078 AGR3Q8TD06 166 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 TFGQ92734 400 aaPredicted RBP29.79■■■□□ 2.36
CTCF-203ENST00000566078 CD244Q9BZW8 370 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 ILKAPQ9H0C8 392 aaPredicted RBP29.79■■■□□ 2.36
CTCF-203ENST00000566078 CFAP20Q9Y6A4 193 aaKnown RBP29.79■■■□□ 2.36
CTCF-203ENST00000566078 KMT2EQ8IZD2 1858 aa29.79■■■□□ 2.36
CTCF-203ENST00000566078 PDZK1P1A8MUH7 402 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 AK4P27144 223 aaPredicted RBP29.78■■■□□ 2.36
CTCF-203ENST00000566078 CLCQ05315 142 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 SRSF5Q13243 272 aaKnown RBP29.78■■■□□ 2.36
CTCF-203ENST00000566078 CAPRIN2Q6IMN6 1127 aaKnown RBP29.78■■■□□ 2.36
CTCF-203ENST00000566078 PARGQ86W56 976 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 CCL4L1Q8NHW4 92 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 DNASE2BQ8WZ79 361 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 FBXL8Q96CD0 374 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 CCDC138Q96M89 665 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 PKP4Q99569 1192 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 SEMA4BQ9NPR2 832 aaPredicted RBP29.78■■■□□ 2.36
CTCF-203ENST00000566078 TRNAU1APQ9NX07 287 aaKnown RBP29.78■■■□□ 2.36
CTCF-203ENST00000566078 KLHL14Q9P2G3 628 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 TMEM131Q92545 1883 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 CCNT2O60583 730 aaKnown RBP29.78■■■□□ 2.36
CTCF-203ENST00000566078 GALNT1Q10472 559 aaPredicted RBP29.78■■■□□ 2.36
CTCF-203ENST00000566078 ZNF542PQ5EBM4 170 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 CUZD1Q86UP6 607 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 OR5AR1Q8NGP9 310 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 C1orf216Q8TAB5 229 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 TRPC4APQ8TEL6 797 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 C12orf66Q96MD2 445 aa29.78■■■□□ 2.36
CTCF-203ENST00000566078 ACTR1BP42025 376 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 ACTR1AP61163 376 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 DUS1LQ6P1R4 473 aaKnown RBP29.77■■■□□ 2.36
CTCF-203ENST00000566078 PHC3Q8NDX5 983 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 RFWD2Q8NHY2 731 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 GAB3Q8WWW8 586 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 TCEAL2Q9H3H9 227 aaPredicted RBP29.77■■■□□ 2.36
CTCF-203ENST00000566078 CAAP1Q9H8G2 361 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 PRDM8Q9NQV8 689 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 OPTCQ9UBM4 332 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 ZDHHC2Q9UIJ5 367 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 HAO1Q9UJM8 370 aa29.77■■■□□ 2.36
CTCF-203ENST00000566078 UBFD1O14562 309 aaKnown RBP29.76■■■□□ 2.35
CTCF-203ENST00000566078 STK16O75716 305 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 RPN2P04844 631 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 GGT5P36269 586 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 GDF5P43026 501 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 LCP2Q13094 533 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 GTF2H2Q13888 395 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 RBBP7Q16576 425 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 UAP1L1Q3KQV9 507 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 GTF2H2CQ6P1K8 395 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 SLC30A9Q6PML9 568 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 GOLGA7Q7Z5G4 137 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 DCUN1D3Q8IWE4 304 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 PHACTR4Q8IZ21 702 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 OR5K2Q8NHB8 316 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 MAGEC3Q8TD91 643 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 ATL1Q8WXF7 558 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 SEC16BQ96JE7 1060 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 INSM2Q96T92 566 aaPredicted RBP29.76■■■□□ 2.35
CTCF-203ENST00000566078 HGH1Q9BTY7 390 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 ZBTB26Q9HCK0 441 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 STOX2Q9P2F5 926 aaPredicted RBP29.76■■■□□ 2.35
CTCF-203ENST00000566078 KLF15Q9UIH9 416 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 DCTN4Q9UJW0 460 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 EPB41L3Q9Y2J2 1087 aaPredicted RBP29.76■■■□□ 2.35
CTCF-203ENST00000566078 TTC28Q96AY4 2481 aa29.76■■■□□ 2.35
CTCF-203ENST00000566078 PCM1Q15154 2024 aa29.75■■■□□ 2.35
CTCF-203ENST00000566078 MYO1CO00159 1063 aa29.75■■■□□ 2.35
CTCF-203ENST00000566078 TLR4O00206 839 aa29.75■■■□□ 2.35
CTCF-203ENST00000566078 ILF3Q12906 894 aaKnown RBP eCLIP29.75■■■□□ 2.351e-7■■□□□ 14.1
CTCF-203ENST00000566078 SH2D4BQ5SQS7 431 aa29.75■■■□□ 2.35
CTCF-203ENST00000566078 C11orf74Q86VG3 221 aa29.75■■■□□ 2.35
CTCF-203ENST00000566078 WDR75Q8IWA0 830 aaKnown RBP29.75■■■□□ 2.35
CTCF-203ENST00000566078 FBXL6Q8N531 539 aa29.75■■■□□ 2.35
CTCF-203ENST00000566078 TRIT1Q9H3H1 467 aaKnown RBP29.75■■■□□ 2.35
CTCF-203ENST00000566078 TBC1D29Q9UFV1 150 aa29.75■■■□□ 2.35
CTCF-203ENST00000566078 FBXO4Q9UKT5 387 aa29.75■■■□□ 2.35
CTCF-203ENST00000566078 SLC6A12P48065 614 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 RPL14P50914 215 aaKnown RBP29.74■■■□□ 2.35
CTCF-203ENST00000566078 CLCA4Q14CN2 919 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 ZXDCQ2QGD7 858 aaPredicted RBP29.74■■■□□ 2.35
CTCF-203ENST00000566078 METTL2BQ6P1Q9 378 aaKnown RBP29.74■■■□□ 2.35
CTCF-203ENST00000566078 TTC23LQ6PF05 361 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 TEX9Q8N6V9 391 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 OR9A1PQ8NGU1 263 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 ATG10Q9H0Y0 220 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 MID1IP1Q9NPA3 183 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 IMP3Q9NV31 184 aaKnown RBP29.74■■■□□ 2.35
CTCF-203ENST00000566078 DNAJC28Q9NX36 388 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 TDRKHQ9Y2W6 561 aaKnown RBP29.74■■■□□ 2.35
CTCF-203ENST00000566078 ANGPTL3Q9Y5C1 460 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 K7EPI3 171 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 PPP6CO00743 305 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 SLC16A8O95907 504 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 IMPA1P29218 277 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 DHPSP49366 369 aaPredicted RBP29.74■■■□□ 2.35
CTCF-203ENST00000566078 BLKP51451 505 aa29.74■■■□□ 2.35
CTCF-203ENST00000566078 LYSMD4Q5XG99 296 aa29.74■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms