RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 SHISA6Q6ZSJ9 500 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 TTLL10Q6ZVT0 673 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 GLT6D1Q7Z4J2 308 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 ADGRF3Q8IZF5 1079 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 MMP21Q8N119 569 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 SLC25A41Q8N5S1 370 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 PQLC3Q8N755 202 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 NIPA2Q8N8Q9 360 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 OR52E1Q8NGJ3 308 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 CCDC110Q8TBZ0 833 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 HM13Q8TCT9 377 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 DTX3LQ8TDB6 740 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 BLOC1S5Q8TDH9 187 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 C14orf79Q96F83 325 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 DCUN1D1Q96GG9 259 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 TRIM56Q9BRZ2 755 aaKnown RBP7.05□□□□□ -1.28
VPS4A-203ENST00000564399 HGH1Q9BTY7 390 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP7.05□□□□□ -1.28
VPS4A-203ENST00000564399 NUP62CLQ9H1M0 184 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 TRABDQ9H4I3 376 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 TFB2MQ9H5Q4 396 aaKnown RBP7.05□□□□□ -1.28
VPS4A-203ENST00000564399 SOX17Q9H6I2 414 aaPredicted RBP7.05□□□□□ -1.28
VPS4A-203ENST00000564399 MRM3Q9HC36 420 aaKnown RBP7.05□□□□□ -1.28
VPS4A-203ENST00000564399 GLOD4Q9HC38 313 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 MCCC2Q9HCC0 563 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 SLC22A11Q9NSA0 550 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 PLA2G3Q9NZ20 509 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 HACD3Q9P035 362 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 IL17CQ9P0M4 197 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 MYO6Q9UM54 1294 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 HS3ST3B1Q9Y662 390 aa7.05□□□□□ -1.28
VPS4A-203ENST00000564399 AKAP9Q99996 3911 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 A0A0A6YYK5 440 aaPredicted RBP7.04□□□□□ -1.28
VPS4A-203ENST00000564399 H3BMH7 237 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 STX7O15400 261 aaKnown RBP7.04□□□□□ -1.28
VPS4A-203ENST00000564399 CLDN14O95500 239 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 PRAMEF1O95521 474 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 F10P00742 488 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 RALBP11234 206 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 SKILP12757 684 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 CD99P14209 185 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 UGT2B7P16662 529 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 HOXB4P17483 251 aaPredicted RBP7.04□□□□□ -1.28
VPS4A-203ENST00000564399 ITGAXP20702 1163 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 MST1P26927 711 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 GABRA4P48169 554 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 TNFSF10P50591 281 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 ART1P52961 327 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 ADORA2A-AS1P86434 159 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 Q0VFX4 171 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 PDK1Q15118 436 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 SLC14A2Q15849 920 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 ZIC1Q15915 447 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 INAQ16352 499 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 NKG7Q16617 165 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 SLC5A12Q1EHB4 618 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 BCL7AQ4VC05 210 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 OVCH1Q7RTY7 1134 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 OR11G2Q8NGC1 345 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 TRAF3IP1Q8TDR0 691 aaPredicted RBP7.04□□□□□ -1.28
VPS4A-203ENST00000564399 DLG3Q92796 817 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 FKBP10Q96AY3 582 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 THAP2Q9H0W7 228 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 ISCUQ9H1K1 167 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 ASB8Q9H765 288 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 MVB12BQ9H7P6 319 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 WDR54Q9H977 334 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 ZNF160Q9HCG1 818 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 SEMA3GQ9NS98 782 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 SMOXQ9NWM0 555 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 ABI3Q9P2A4 366 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 PTGFRNQ9P2B2 879 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 PLCL2Q9UPR0 1127 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 DNAJC13O75165 2243 aa7.04□□□□□ -1.28
VPS4A-203ENST00000564399 JMJD1CQ15652 2540 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 A0A0J9YY10 115 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 C17orf113A0A1B0GUU1 675 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 A0A1B0GX78 115 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 LRRC10BA6NIK2 292 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 ISM1B1AKI9 464 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 CFAP99D6REC4 459 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 GAPDHSO14556 408 aaPredicted RBP7.03□□□□□ -1.28
VPS4A-203ENST00000564399 MAP2K7O14733 419 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 PPP1R12AO14974 1030 aaPredicted RBP7.03□□□□□ -1.28
VPS4A-203ENST00000564399 FANCGO15287 622 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 SLC19A2O60779 497 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 USP1O94782 785 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 RASAL1O95294 804 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 HPP00738 406 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 ALBP02768 609 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 MYBL2P10244 700 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 AGAP20933 346 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 PRKCIP41743 596 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 CHRNA4P43681 627 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 ARSFP54793 590 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 WNT3AP56704 352 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 PTPRCAPQ14761 206 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 C3AR1Q16581 482 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 TEX44Q53QW1 395 aa7.03□□□□□ -1.28
VPS4A-203ENST00000564399 SIRPB2Q5JXA9 342 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms