RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 SPATA46Q5T0L3 261 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 FAM69AQ5T7M9 428 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 RNF220Q5VTB9 566 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 FAM171A1Q5VUB5 890 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 GARNL3Q5VVW2 1013 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SNRNP48Q6IEG0 339 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 PLEKHA7Q6IQ23 1121 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 RINT1Q6NUQ1 792 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 C1orf94Q6P1W5 598 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 TTC33Q6PID6 262 aaPredicted RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 STOX1Q6ZVD7 989 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 MAEAQ7L5Y9 396 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SLC29A4Q7RTT9 530 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 GPR141Q7Z602 305 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 TAC4Q86UU9 113 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CNGA4Q8IV77 575 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 DDIASQ8IXT1 998 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 ELMOD1Q8N336 334 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SLC15A4Q8N697 577 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 DNAJC5GQ8N7S2 189 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 EIF1ADQ8N9N8 165 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 MLKLQ8NB16 471 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SEMA6DQ8NFY4 1073 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 RP9Q8TA86 221 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 PYDC1Q8WXC3 89 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 ABTB1Q969K4 478 aaPredicted RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 FBXO32Q969P5 355 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 RFT1Q96AA3 541 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 ISG20Q96AZ6 181 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 CCDC17Q96LX7 622 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CCNL2Q96S94 520 aaPredicted RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 KCNK16Q96T55 309 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 ZBTB18Q99592 522 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 B3GNT5Q9BYG0 378 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 DPEP3Q9H4B8 488 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 OPA3Q9H6K4 179 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 COQ10BQ9H8M1 238 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SLC40A1Q9NP59 571 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SLC35C2Q9NQQ7 365 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 TBC1D13Q9NVG8 400 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 PAG1Q9NWQ8 432 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SMPD3Q9NY59 655 aaPredicted RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 MTMR4Q9NYA4 1195 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 TAB2Q9NYJ8 693 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 NKIRAS1Q9NYS0 192 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 TAS2R10Q9NYW0 307 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 PTTG2Q9NZH5 202 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 C5AR2Q9P296 337 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CTNNAL1Q9UBT7 734 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 DCDC2Q9UHG0 476 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 TINAGQ9UJW2 476 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 APPL1Q9UKG1 709 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 OGDHLQ9ULD0 1010 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SLC9A8Q9Y2E8 581 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 CCL27Q9Y4X3 112 aa5.01□□□□□ -1.61
VPS35-205ENST00000563984 SRPRBQ9Y5M8 271 aaKnown RBP5.01□□□□□ -1.61
VPS35-205ENST00000563984 LMTK3Q96Q04 1460 aa5□□□□□ -1.61
VPS35-205ENST00000563984 PDS5AQ29RF7 1337 aaKnown RBP5□□□□□ -1.61
VPS35-205ENST00000563984 PHLPP2Q6ZVD8 1323 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CEP162Q5TB80 1403 aa5□□□□□ -1.61
VPS35-205ENST00000563984 SMG6Q86US8 1419 aaKnown RBP5□□□□□ -1.61
VPS35-205ENST00000563984 A0A1W2PN81 502 aa5□□□□□ -1.61
VPS35-205ENST00000563984 A1L4Q6 167 aa5□□□□□ -1.61
VPS35-205ENST00000563984 RAB19A4D1S5 217 aa5□□□□□ -1.61
VPS35-205ENST00000563984 KPNA7A9QM74 516 aa5□□□□□ -1.61
VPS35-205ENST00000563984 TCP11X1B4DZS4 312 aa5□□□□□ -1.61
VPS35-205ENST00000563984 H0YIZ8 118 aa5□□□□□ -1.61
VPS35-205ENST00000563984 MYO1FO00160 1098 aa5□□□□□ -1.61
VPS35-205ENST00000563984 QSOX1O00391 747 aa5□□□□□ -1.61
VPS35-205ENST00000563984 PFDN6O15212 129 aa5□□□□□ -1.61
VPS35-205ENST00000563984 JRKO75564 520 aa5□□□□□ -1.61
VPS35-205ENST00000563984 UFL1O94874 794 aa5□□□□□ -1.61
VPS35-205ENST00000563984 MFN2O95140 757 aa5□□□□□ -1.61
VPS35-205ENST00000563984 AKR7A3O95154 331 aa5□□□□□ -1.61
VPS35-205ENST00000563984 TGM6O95932 706 aa5□□□□□ -1.61
VPS35-205ENST00000563984 APOC1P02654 83 aa5□□□□□ -1.61
VPS35-205ENST00000563984 FABP1P07148 127 aa5□□□□□ -1.61
VPS35-205ENST00000563984 TFPTP0C1Z6 253 aa5□□□□□ -1.61
VPS35-205ENST00000563984 FAM86B2P0C5J1 330 aa5□□□□□ -1.61
VPS35-205ENST00000563984 KITP10721 976 aa5□□□□□ -1.61
VPS35-205ENST00000563984 SLC2A3P11169 496 aa5□□□□□ -1.61
VPS35-205ENST00000563984 IL1R1P14778 569 aa5□□□□□ -1.61
VPS35-205ENST00000563984 EN2P19622 333 aaPredicted RBP5□□□□□ -1.61
VPS35-205ENST00000563984 HMGCLP35914 325 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CHRNA7P36544 502 aa5□□□□□ -1.61
VPS35-205ENST00000563984 LIPAP38571 399 aa5□□□□□ -1.61
VPS35-205ENST00000563984 EIF2DP41214 584 aaKnown RBP5□□□□□ -1.61
VPS35-205ENST00000563984 CASP3P42574 277 aa5□□□□□ -1.61
VPS35-205ENST00000563984 ALDH3B1P43353 468 aa5□□□□□ -1.61
VPS35-205ENST00000563984 GSSP48637 474 aa5□□□□□ -1.61
VPS35-205ENST00000563984 FHITP49789 147 aa5□□□□□ -1.61
VPS35-205ENST00000563984 ARSEP51690 589 aa5□□□□□ -1.61
VPS35-205ENST00000563984 CLCN5P51795 746 aa5□□□□□ -1.61
VPS35-205ENST00000563984 EIF3BP55884 814 aaKnown RBP5□□□□□ -1.61
VPS35-205ENST00000563984 EEFSECP57772 596 aaKnown RBP5□□□□□ -1.61
VPS35-205ENST00000563984 HPCAP84074 193 aa5□□□□□ -1.61
VPS35-205ENST00000563984 ECT2LQ008S8 904 aa5□□□□□ -1.61
VPS35-205ENST00000563984 SP2Q02086 613 aa5□□□□□ -1.61
VPS35-205ENST00000563984 RELAQ04206 551 aa5□□□□□ -1.61
VPS35-205ENST00000563984 MYO1EQ12965 1108 aa5□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms