RNA–Protein interactions for RNA: ENST00000558836.5

CUX1-217, Transcript of cut like homeobox 1, humanhuman

TSL 5

Gene CUX1, Length 2,965 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-217ENST00000558836 SELENOMQ8WWX9 145 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 AURKBQ96GD4 344 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 HIST1H2AHQ96KK5 128 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 EGLN2Q96KS0 407 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 TSSK3Q96PN8 268 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 HIST1H2AJQ99878 128 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 H2AFJQ9BTM1 129 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 EFHD1Q9BUP0 239 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 TRIM54Q9BYV2 358 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 HEBP1Q9NRV9 189 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 SLC6A13Q9NSD5 602 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 CCM2LQ9NUG4 571 aaPredicted RBP10.38□□□□□ -0.75
CUX1-217ENST00000558836 PKD2L2Q9NZM6 624 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 ACTR3BQ9P1U1 418 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 PRKAG2Q9UGJ0 569 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 LZTS1Q9Y250 596 aa10.38□□□□□ -0.75
CUX1-217ENST00000558836 KANSL1LA0AUZ9 987 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 LINC01553A4QN01 128 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 TSPAN6O43657 245 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 CLDN9O95484 217 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 C1QCP02747 245 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 HRH2P25021 359 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 TACR1P25103 407 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 NNMTP40261 264 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 GNPDA1P46926 289 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 DDX39BQ13838 428 aaKnown RBP10.37□□□□□ -0.75
CUX1-217ENST00000558836 ACOX1Q15067 660 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 PYCR3Q53H96 274 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 PHACTR4Q8IZ21 702 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 ADGRG5Q8IZF4 528 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 ST13P4Q8IZP2 240 aaPredicted RBP10.37□□□□□ -0.75
CUX1-217ENST00000558836 ASB11Q8WXH4 323 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 NXPE3Q969Y0 559 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 THUMPD3Q9BV44 507 aaKnown RBP10.37□□□□□ -0.75
CUX1-217ENST00000558836 SLC32A1Q9H598 525 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 PARVBQ9HBI1 364 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 LRTM1Q9HBL6 345 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 C16orf96A6NNT2 1141 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 SGTAO43765 313 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 GNAO1P09471 354 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 EN2P19622 333 aaPredicted RBP10.37□□□□□ -0.75
CUX1-217ENST00000558836 MSH3P20585 1137 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 VARSP26640 1264 aaKnown RBP10.37□□□□□ -0.75
CUX1-217ENST00000558836 EPHA5P54756 1037 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 TSTA3Q13630 321 aaPredicted RBP10.37□□□□□ -0.75
CUX1-217ENST00000558836 ADNP2Q6IQ32 1131 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 FBXO46Q6PJ61 603 aaPredicted RBP10.37□□□□□ -0.75
CUX1-217ENST00000558836 ADGRD2Q7Z7M1 963 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 HID1Q8IV36 788 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 GPR65Q8IYL9 337 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 MARVELD2Q8N4S9 558 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 CATSPER1Q8NEC5 780 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 PPP3R2Q96LZ3 170 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 CENPKQ9BS16 269 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 DPY30Q9C005 99 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 CEP44Q9C0F1 390 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 SOX17Q9H6I2 414 aaPredicted RBP10.37□□□□□ -0.75
CUX1-217ENST00000558836 DUS2Q9NX74 493 aaKnown RBP10.37□□□□□ -0.75
CUX1-217ENST00000558836 RAB26Q9ULW5 256 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 OAZ3Q9UMX2 235 aa10.37□□□□□ -0.75
CUX1-217ENST00000558836 PRRT4C9JH25 899 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 K7ESM1 405 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 EBLN1P0CF75 366 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 IL10P22301 178 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 PDHA2P29803 388 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 HALP42357 657 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 DGKGP49619 791 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 NAA20P61599 178 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 GRIK2Q13002 908 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 INPP5AQ14642 412 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 PRSS36Q5K4E3 855 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 GLYATQ6IB77 296 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 LCN8Q6JVE9 175 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 BRAT1Q6PJG6 821 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 ERMP1Q7Z2K6 904 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 EPHX4Q8IUS5 362 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 AHI1Q8N157 1196 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 OR10Q1Q8NGQ4 319 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 OR10A6Q8NH74 314 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 BIRC7Q96CA5 298 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 MED8Q96G25 268 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 RNF145Q96MT1 663 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 CGREF1Q99674 301 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 CCT7Q99832 543 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 NTMT1Q9BV86 223 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 EBPLQ9BY08 206 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 Q9H521 79 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 ELOVL6Q9H5J4 265 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 IL36AQ9UHA7 158 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 EIF3LQ9Y262 564 aaKnown RBP10.36□□□□□ -0.75
CUX1-217ENST00000558836 IGLV3-16A0A075B6K0 115 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 RNF103-CHMP3A0A140T963 221 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 AREL1O15033 823 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 TULP3O75386 442 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 SEC24DO94855 1032 aaPredicted RBP10.36□□□□□ -0.75
CUX1-217ENST00000558836 CYP17A1P05093 508 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 BCKDHAP12694 445 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 EFNA1P20827 205 aaPredicted RBP10.36□□□□□ -0.75
CUX1-217ENST00000558836 NFKBIAP25963 317 aa10.36□□□□□ -0.75
CUX1-217ENST00000558836 VIPR1P32241 457 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms