RNA–Protein interactions for RNA: ENST00000558338.1

VPS13C-206, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 1,863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-206ENST00000558338 UGT2B28Q9BY64 529 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 CPEB1Q9BZB8 566 aaKnown RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 DPY30Q9C005 99 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 SLC32A1Q9H598 525 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 NSUN3Q9H649 340 aaKnown RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 CAAP1Q9H8G2 361 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 RC3H2Q9HBD1 1191 aaKnown RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 LRTM1Q9HBL6 345 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 RAD18Q9NS91 495 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 INTS7Q9NVH2 962 aaKnown RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 SMPD3Q9NY59 655 aaPredicted RBP7.12□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF639Q9UID6 485 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 HS3ST2Q9Y278 367 aa7.12□□□□□ -1.27
VPS13C-206ENST00000558338 IGLV3-16A0A075B6K0 115 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TRIM64CA6NLI5 447 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ZBBXA8MT70 800 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 QSOX1O00391 747 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 MANBAO00462 879 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 VILLO15195 856 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 GSTA4O15217 222 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 GPR39O43194 453 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 SMAD6O43541 496 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 NDUFB5O43674 189 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TPST1O60507 370 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 RSL1D1O76021 490 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CLDN9O95484 217 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 GUCA1CO95843 209 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 HPRP00739 348 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 HIST1H2AGP0C0S8 130 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CYP2A6P11509 494 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 MTHFD1P11586 935 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PRPS2P11908 318 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 SRCP12931 536 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF30P17039 623 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ITGB6P18564 788 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 GGT1P19440 569 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 HIST1H2ADP20671 130 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CYP2A7P20853 494 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PRPH2P23942 346 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 HRH2P25021 359 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 GGT5P36269 586 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CAPGP40121 348 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 RPS9P46781 194 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ALDH3B2P48448 385 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 POLR2LP62875 67 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CYP4F8P98187 520 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CHRNB3Q05901 458 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF33BQ06732 778 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 GK3PQ14409 553 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 DMC1Q14565 340 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 MAPKAPK3Q16644 382 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 MYLK3Q32MK0 819 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 SLC36A3Q495N2 470 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PLEKHS1Q5SXH7 462 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 C1orf53Q5VUE5 145 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 FAM219BQ5XKK7 198 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TTC33Q6PID6 262 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ABRAXAS1Q6UWZ7 409 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 DLEU7Q6UYE1 221 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 NEK10Q6ZWH5 1172 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 BBS7Q8IWZ6 715 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 DHRSXQ8N5I4 330 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 METTL25Q8N6Q8 603 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 FAM47BQ8NA70 645 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 OR6K2Q8NGY2 324 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 SVIPQ8NHG7 77 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ITFG1Q8TB96 612 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PNPT1Q8TCS8 783 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 BPIFB1Q8TDL5 484 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF296Q8WUU4 475 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 BIRC7Q96CA5 298 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 HIST1H2AHQ96KK5 128 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 DEFB118Q96PH6 123 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 DEPDC7Q96QD5 511 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 HIST1H2AJQ99878 128 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 C17orf80Q9BSJ5 609 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 H2AFJQ9BTM1 129 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 LDHAL6BQ9BYZ2 381 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 SUV39H2Q9H5I1 410 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CLMPQ9H6B4 373 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 RMND5AQ9H871 391 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 GORASP2Q9H8Y8 452 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TIMMDC1Q9NPL8 285 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ENAMQ9NRM1 1142 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 OLAHQ9NV23 265 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 SMOXQ9NWM0 555 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 C1orf109Q9NX04 203 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ELOVL2Q9NXB9 296 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 SAGE1Q9NXZ1 904 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PKD2L2Q9NZM6 624 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 GMPR2Q9P2T1 348 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 KLQ9UEF7 1012 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 NIPSNAP3AQ9UFN0 247 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 RSL24D1Q9UHA3 163 aaKnown RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 ZNF490Q9ULM2 529 aaPredicted RBP7.11□□□□□ -1.27
VPS13C-206ENST00000558338 OAZ3Q9UMX2 235 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 SNX6Q9UNH7 406 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 TMED5Q9Y3A6 229 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 CCL27Q9Y4X3 112 aa7.11□□□□□ -1.27
VPS13C-206ENST00000558338 PRSS21Q9Y6M0 314 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms