RNA–Protein interactions for RNA: ENST00000556412.4

VIPAS39-208, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 2 BASIC

Gene VIPAS39, Length 1,832 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-208ENST00000556412 ABCG4Q9H172 646 aa13.66□□□□□ -0.22
VIPAS39-208ENST00000556412 KNL1Q8NG31 2342 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 CASC3O15234 703 aaKnown RBP13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 KDM1AO60341 852 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 RPLP0P05388 317 aaKnown RBP13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 PYGBP11216 843 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 CD1DP15813 335 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 AMD1P17707 334 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 CSRP1P21291 193 aaKnown RBP13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 DLG1Q12959 904 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 RASA2Q15283 850 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 FAM83EQ2M2I3 478 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 LRIG3Q6UXM1 1119 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 TIFABQ6ZNK6 161 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 SPRED1Q7Z699 444 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 MZB1Q8WU39 189 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 EXT2Q93063 718 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 RAD51AP1Q96B01 352 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 PDLIM5Q96HC4 596 aaKnown RBP13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 UBXN10Q96LJ8 280 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 IL17FQ96PD4 163 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 TMEM109Q9BVC6 243 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 SRMSQ9H3Y6 488 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 IGSF5Q9NSI5 407 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 EURLQ9NYK6 297 aa13.65□□□□□ -0.22
VIPAS39-208ENST00000556412 DCDC2BA2VCK2 349 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 TM4SF5O14894 197 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 RGS16O15492 202 aaPredicted RBP13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ZW10O43264 779 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 RFPL3O75679 317 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 UBXN7O94888 489 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 GUCA1CO95843 209 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 TOP3BO95985 862 aaKnown RBP13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 HIST1H2AGP0C0S8 130 aaPredicted RBP13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 TFEBP19484 476 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 HIST1H2ADP20671 130 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 SDHBP21912 280 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 PI4KAP42356 2102 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 MAGEA12P43365 314 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ATP6V0D1P61421 351 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 SP140Q13342 867 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 PHKG1Q16816 387 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 KLC3Q6P597 504 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 HDXQ7Z353 690 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ZNF438Q7Z4V0 828 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 CCDC91Q7Z6B0 441 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 CENPLQ8N0S6 344 aaPredicted RBP13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 C2orf73Q8N5S3 287 aaPredicted RBP13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 LMNTD1Q8N9Z9 388 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 MCOLN3Q8TDD5 553 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 DLG3Q92796 817 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 CABS1Q96KC9 395 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 SCYL1Q96KG9 808 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 HIST1H2AHQ96KK5 128 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 HIST1H2AJQ99878 128 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 H2AFJQ9BTM1 129 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 TRIM54Q9BYV2 358 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ALG9Q9H6U8 611 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 PARVBQ9HBI1 364 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 NMRAL1Q9HBL8 299 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ZNF358Q9NW07 568 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 PDE10AQ9Y233 779 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 OR6C74A6NCV1 312 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 LILRA5A6NI73 299 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 GOLGA6L10A6NI86 522 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 GFYI3L273 518 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 SLC16A5O15375 505 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 B4GAT1O43505 415 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 KLHL2O95198 593 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 PROS1P07225 676 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 PNLIPP16233 465 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 SLC26A3P40879 764 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 GPR3P46089 330 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 CSRP3P50461 194 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 CCL7P80098 99 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 TSTA3Q13630 321 aaPredicted RBP13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 MBOAT1Q6ZNC8 495 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 USP53Q70EK8 1073 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ADAMTSL2Q86TH1 951 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 TAX1BP1Q86VP1 789 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 AMIGO1Q86WK6 493 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 SRRM1Q8IYB3 904 aaKnown RBP13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 CNPY4Q8N129 248 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 C4orf33Q8N1A6 199 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 PLD6Q8N2A8 252 aaKnown RBP13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 RAB42Q8N4Z0 105 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ZFPM2Q8WW38 1151 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 NCSTNQ92542 709 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 PKP4Q99569 1192 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 RTKNQ9BST9 563 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 SLC12A9Q9BXP2 914 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 UCK1Q9HA47 277 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 RDH14Q9HBH5 336 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ABCF3Q9NUQ8 709 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ARL15Q9NXU5 204 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 LGALS13Q9UHV8 139 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 RNF112Q9ULX5 631 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 ICKQ9UPZ9 632 aa13.64□□□□□ -0.23
VIPAS39-208ENST00000556412 IGHV1OR21-1A0A087WYE8 117 aa13.63□□□□□ -0.23
VIPAS39-208ENST00000556412 NCF1BA6NI72 391 aaPredicted RBP13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms