RNA–Protein interactions for RNA: ENST00000556353.1

PRPF39-209, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 687 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-209ENST00000556353 ETNPPLQ8TBG4 499 aa4.57□□□□□ -1.68
PRPF39-209ENST00000556353 UBA5Q9GZZ9 404 aa4.57□□□□□ -1.68
PRPF39-209ENST00000556353 PDZD7Q9H5P4 517 aa4.57□□□□□ -1.68
PRPF39-209ENST00000556353 JMJD4Q9H9V9 463 aa4.57□□□□□ -1.68
PRPF39-209ENST00000556353 FGF22Q9HCT0 170 aa4.57□□□□□ -1.68
PRPF39-209ENST00000556353 UBN1Q9NPG3 1134 aa4.57□□□□□ -1.68
PRPF39-209ENST00000556353 MTMR10Q9NXD2 777 aa4.57□□□□□ -1.68
PRPF39-209ENST00000556353 TMEM184BQ9Y519 407 aaPredicted RBP4.57□□□□□ -1.68
PRPF39-209ENST00000556353 SZT2Q5T011 3432 aa4.57□□□□□ -1.68
PRPF39-209ENST00000556353 FLT1P17948 1338 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 A0A1B0GVY2 172 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 HCRTR2O43614 444 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 ZNF821O75541 412 aaPredicted RBP4.56□□□□□ -1.68
PRPF39-209ENST00000556353 PPP2R1AP30153 589 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 BSGP35613 385 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 CASP6P55212 293 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 RALBP1Q15311 655 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 TMEM95Q3KNT9 176 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 CYP20A1Q6UW02 462 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 OLFM4Q6UX06 510 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 MFSD6Q6ZSS7 791 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 SH2D5Q6ZV89 423 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 MCM10Q7L590 875 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 DIS3L2Q8IYB7 885 aaKnown RBP4.56□□□□□ -1.68
PRPF39-209ENST00000556353 ZNF622Q969S3 477 aaKnown RBP eCLIP4.56□□□□□ -1.68
PRPF39-209ENST00000556353 OPRPNQ99935 248 aaPredicted RBP4.56□□□□□ -1.68
PRPF39-209ENST00000556353 POLR1BQ9H9Y6 1135 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 PTTG2Q9NZH5 202 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 LIMA1Q9UHB6 759 aaKnown RBP4.56□□□□□ -1.68
PRPF39-209ENST00000556353 KCNJ14Q9UNX9 436 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 MRPS28Q9Y2Q9 187 aaKnown RBP4.56□□□□□ -1.68
PRPF39-209ENST00000556353 RNF215Q9Y6U7 377 aa4.56□□□□□ -1.68
PRPF39-209ENST00000556353 CASP8AP2Q9UKL3 1982 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 SH2B2O14492 632 aaPredicted RBP4.55□□□□□ -1.68
PRPF39-209ENST00000556353 ZBTB43O43298 467 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 TOMM70O94826 608 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 HRH2P25021 359 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 HMGB2P26583 209 aaKnown RBP4.55□□□□□ -1.68
PRPF39-209ENST00000556353 CALRP27797 417 aaKnown RBP4.55□□□□□ -1.68
PRPF39-209ENST00000556353 PIK3CAP42336 1068 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 CLK1P49759 484 aaKnown RBP4.55□□□□□ -1.68
PRPF39-209ENST00000556353 TMEM187Q14656 261 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 PTOV1Q86YD1 416 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 NME8Q8N427 588 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 FRMD1Q8N878 549 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 SMPDL3BQ92485 455 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 ZNF653Q96CK0 615 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 ERVMER34-1Q9H9K5 563 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 ECHDC1Q9NTX5 307 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 RCC2Q9P258 522 aaKnown RBP4.55□□□□□ -1.68
PRPF39-209ENST00000556353 B3GALT5Q9Y2C3 310 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 KCNE2Q9Y6J6 123 aa4.55□□□□□ -1.68
PRPF39-209ENST00000556353 LAMA2P24043 3122 aaKnown RBP4.55□□□□□ -1.68
PRPF39-209ENST00000556353 STK36Q9NRP7 1315 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 A0A087X002 238 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 MAGEB17A8MXT2 336 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 PLOD2O00469 737 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 ARHGEF9O43307 516 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 PLPP2O43688 288 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 CEACAM1P13688 526 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 LIFP15018 202 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 MMP15P51511 669 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 NIPAL4Q0D2K0 466 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 LCE3CQ5T5A8 94 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 TSPAN33Q86UF1 283 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 ARHGAP12Q8IWW6 846 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 HACE1Q8IYU2 909 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 PERPQ96FX8 193 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 LINC00479Q96M42 142 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 TBATAQ96M53 351 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 WDFY2Q96P53 400 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 PLEKHF1Q96S99 279 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 RHNO1Q9BSD3 238 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 THUMPD2Q9BTF0 503 aaKnown RBP4.54□□□□□ -1.68
PRPF39-209ENST00000556353 SIX2Q9NPC8 291 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 ZDHHC18Q9NUE0 388 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 MIS18AQ9NYP9 233 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 DNAJB4Q9UDY4 337 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 USP16Q9Y5T5 823 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 RIC1Q4ADV7 1423 aa4.54□□□□□ -1.68
PRPF39-209ENST00000556353 LAMA3Q16787 3333 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 UBN2Q6ZU65 1347 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 ZNF541Q9H0D2 1346 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 FAM237BA0A1B0GVD1 139 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 NDUFAF8A1L188 74 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 TCERG1O14776 1098 aaKnown RBP4.53□□□□□ -1.68
PRPF39-209ENST00000556353 SMAD9O15198 467 aaKnown RBP4.53□□□□□ -1.68
PRPF39-209ENST00000556353 SLC22A2O15244 555 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 ZNF217O75362 1048 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 STARD3NLO95772 234 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 CLPTM1O96005 669 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 HIST1H2ABP04908 130 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 HIST1H2ADP20671 130 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 ITGA3P26006 1051 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 RGS2P41220 211 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 CCR9P51686 369 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 KCNJ10P78508 379 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 TEFQ10587 303 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 TUBB2AQ13885 445 aa4.53□□□□□ -1.68
PRPF39-209ENST00000556353 MVPQ14764 893 aaKnown RBP4.53□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms