RNA–Protein interactions for RNA: ENST00000555550.1

SCFD1-216, Transcript of sec1 family domain containing 1, humanhuman

TSL 4

Gene SCFD1, Length 541 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-216ENST00000555550 PSRC1Q6PGN9 363 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 FIGLAQ6QHK4 219 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 AACSQ86V21 672 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 CDK20Q8IZL9 346 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 C17orf53Q8N3J3 647 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 BMPERQ8N8U9 685 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 TRIML1Q8N9V2 468 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 TEX19Q8NA77 164 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 OR5M8Q8NGP6 311 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 OLIG1Q8TAK6 271 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 ARHGAP45Q92619 1136 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 RBM4BQ9BQ04 359 aaKnown RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 FUCA2Q9BTY2 467 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 LMF2Q9BU23 707 aaKnown RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 FGFBP2Q9BYJ0 223 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 PPIL3Q9H2H8 161 aaKnown RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 SDR39U1Q9NRG7 319 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 CACNG4Q9UBN1 327 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 LRWD1Q9UFC0 647 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 SEC63Q9UGP8 760 aaKnown RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 ZNF215Q9UL58 517 aaPredicted RBP3.31□□□□□ -1.88
SCFD1-216ENST00000555550 PLAGL1Q9UM63 463 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 ZNF148Q9UQR1 794 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 WDR37Q9Y2I8 494 aa3.31□□□□□ -1.88
SCFD1-216ENST00000555550 ANKRD61A6NGH8 418 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 PALM2-AKAP2B1ALY0 433 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-216ENST00000555550 TSPAN1O60635 241 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 BAIAP3O94812 1187 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 DUS4LO95620 317 aaKnown RBP3.3□□□□□ -1.88
SCFD1-216ENST00000555550 SLC6A6P31641 620 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 CDK3Q00526 305 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 CXCL9Q07325 125 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 NR1D2Q14995 579 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 E2F5Q15329 346 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 RAB41Q5JT25 222 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 ZNF613Q6PF04 617 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 TBC1D1Q86TI0 1168 aaPredicted RBP3.3□□□□□ -1.88
SCFD1-216ENST00000555550 MAPKAPK5-AS1Q8N8E1 139 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 PAPD5Q8NDF8 572 aaKnown RBP3.3□□□□□ -1.88
SCFD1-216ENST00000555550 MCUQ8NE86 351 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 OR13J1Q8NGT2 312 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 FAM222BQ8WU58 562 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 DYRK2Q92630 601 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 PAFAH2Q99487 392 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 URM1Q9BTM9 101 aaKnown RBP3.3□□□□□ -1.88
SCFD1-216ENST00000555550 DGCR6LQ9BY27 220 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 PITPNM3Q9BZ71 974 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 ARRDC1-AS1Q9H2J1 176 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 EPHA6Q9UF33 1036 aa3.3□□□□□ -1.88
SCFD1-216ENST00000555550 AVILO75366 819 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 CREG1O75629 220 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 ZFAND5O76080 213 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 NXPH2O95156 264 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 GCH1P30793 250 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 PNLIPRP2P54317 469 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 HERV-K104P61576 105 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 SIRPAP78324 504 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 MC1RQ01726 317 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 HLA-BQ31612 363 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 IGSF11Q5DX21 431 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 WLSQ5T9L3 541 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 DHRS7BQ6IAN0 325 aaPredicted RBP3.29□□□□□ -1.88
SCFD1-216ENST00000555550 DOK6Q6PKX4 331 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 C4orf50Q6ZRC1 276 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 TMPRSS11FQ6ZWK6 438 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 P2RY8Q86VZ1 359 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 HOGA1Q86XE5 327 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 LACC1Q8IV20 430 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 TMEM139Q8IV31 216 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 AFAP1Q8N556 730 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 MOSPD2Q8NHP6 518 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 CCDC107Q8WV48 283 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 IRGQQ8WZA9 623 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 NEK1Q96PY6 1258 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 CDRT15Q96T59 188 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 CHCHD6Q9BRQ6 235 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 KIFC3Q9BVG8 833 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 OSGEPL1Q9H4B0 414 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 TBC1D17Q9HA65 648 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 RNF186Q9NXI6 227 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 PSD3Q9NYI0 1048 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 TAB2Q9NYJ8 693 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 SUCLA2Q9P2R7 463 aaPredicted RBP3.29□□□□□ -1.88
SCFD1-216ENST00000555550 MTUS1Q9ULD2 1270 aa3.29□□□□□ -1.88
SCFD1-216ENST00000555550 ITIH6Q6UXX5 1313 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 A0A1W2PQ09 198 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 HEPACAM2A8MVW5 462 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 ZNF195O14628 629 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 RNASEH1O60930 286 aaKnown RBP3.28□□□□□ -1.88
SCFD1-216ENST00000555550 MED24O75448 989 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 CLDN1O95832 211 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 GPIP06744 558 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 ACSL1P33121 698 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 RPL21P46778 160 aaKnown RBP3.28□□□□□ -1.88
SCFD1-216ENST00000555550 SQLEQ14534 574 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 UGP2Q16851 508 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 FASTKD1Q53R41 847 aaKnown RBP3.28□□□□□ -1.88
SCFD1-216ENST00000555550 ELFN2Q5R3F8 820 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 C20orf194Q5TEA3 1177 aa3.28□□□□□ -1.88
SCFD1-216ENST00000555550 LRRTM1Q86UE6 522 aa3.28□□□□□ -1.88
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms