RNA–Protein interactions for RNA: ENST00000552909.5

LIMA1-216, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 2,162 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-216ENST00000552909 CXCR2P25025 360 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 POLR2IP36954 125 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 YAP1P46937 504 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 ECT2LQ008S8 904 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 IFITM3Q01628 133 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 NSUN2Q08J23 767 aaKnown RBP eCLIP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 PRKAA1Q13131 559 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 STX5Q13190 355 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 MAPRE2Q15555 327 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 TPSAB1Q15661 275 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 ATP6AP1Q15904 470 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 WDR45BQ5MNZ6 344 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SAMD4BQ5PRF9 694 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 C6orf10Q5SRN2 563 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SLX4IPQ5VYV7 408 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 RNF219Q5W0B1 726 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 STEAP4Q687X5 459 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 FAAH2Q6GMR7 532 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SIGIRRQ6IA17 410 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CASC4Q6P4E1 433 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 C4orf22Q6V702 233 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 GK5Q6ZS86 529 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 LINC00299Q6ZSB3 139 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 KIAA0408Q6ZU52 694 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CHST15Q7LFX5 561 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SLC22A16Q86VW1 577 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 DCP2Q8IU60 420 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 GALNT13Q8IUC8 556 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SNX29P2Q8IUI4 249 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 EPHX4Q8IUS5 362 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 LRRC49Q8IUZ0 686 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CCDC117Q8IWD4 279 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 ZCCHC7Q8N3Z6 543 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SFRP1Q8N474 314 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CCNYQ8ND76 341 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SUN5Q8TC36 379 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CANT1Q8WVQ1 401 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 VMP1Q96GC9 406 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CSF3RQ99062 836 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 LGMNQ99538 433 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 GATA5Q9BWX5 397 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 LHPPQ9H008 270 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 NOL6Q9H6R4 1146 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CPNE5Q9HCH3 593 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SNX15Q9NRS6 342 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CRNNQ9UBG3 495 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 AURKCQ9UQB9 309 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 ERVW-1Q9UQF0 538 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 PCDHGA11Q9Y5H2 935 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 BCLAF3A2AJT9 711 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 GRID2O43424 1007 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 MFSD11O43934 449 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SYNCRIPO60506 623 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 BCAS1O75363 584 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 RASAL1O95294 804 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 PIGNO95427 931 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 TFEBP19484 476 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 FASP25445 335 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 OR1E1P30953 314 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 P2RY2P41231 377 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 ZNF135P52742 658 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CDC20Q12834 499 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SPCS2Q15005 226 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 PAFAH1B3Q15102 231 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 PLK5Q496M5 336 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 GTF2IRD2BQ6EKJ0 949 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CRTC3Q6UUV7 619 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 RFPL4BQ6ZWI9 263 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CEP68Q76N32 757 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CMC1Q7Z7K0 106 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 GTF2IRD2Q86UP8 949 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 ARMC8Q8IUR7 673 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SPERTQ8NA61 448 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 OR7D4Q8NG98 312 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 TRIM15Q9C019 465 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 ZYG11BQ9C0D3 744 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 NEK6Q9HC98 313 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 PRSS16Q9NQE7 514 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 CCM2LQ9NUG4 571 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SMPD3Q9NY59 655 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 WARS2Q9UGM6 360 aaKnown RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 MBD1Q9UIS9 605 aaPredicted RBP7.52□□□□□ -1.21
LIMA1-216ENST00000552909 MID2Q9UJV3 735 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 SARDHQ9UL12 918 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 ACTL7AQ9Y615 435 aa7.52□□□□□ -1.21
LIMA1-216ENST00000552909 PI4KAP42356 2102 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CHD5Q8TDI0 1954 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 SPTBN2O15020 2390 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 FAM149AA5PLN7 773 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 K7ERQ8 282 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 SNPHO15079 494 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 NPC1O15118 1278 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 DYRK3O43781 588 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 IDH3BO43837 385 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 ABCB7O75027 752 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 SRP72O76094 671 aaKnown RBP7.51□□□□□ -1.21
LIMA1-216ENST00000552909 NTRK1P04629 796 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 RHOCP08134 193 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 IL10P22301 178 aa7.51□□□□□ -1.21
LIMA1-216ENST00000552909 CNR2P34972 360 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms