RNA–Protein interactions for RNA: ENST00000552823.5

LIMA1-215, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene LIMA1, Length 3,254 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-215ENST00000552823 SCHIP1Q9P0W5 487 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 FNIP2Q9P278 1114 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 LEF1Q9UJU2 399 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 INVSQ9Y283 1065 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 VPS9D1Q9Y2B5 631 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 CKAP5Q14008 2032 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SCN2AQ99250 2005 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 A0A1W2PP18 115 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 hCG_2039718K7EN88 272 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ZNF821O75541 412 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OTCP00480 354 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TGFB1P01137 390 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OPN1SWP03999 348 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 C1SP09871 688 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ELFN1P0C7U0 828 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GNPDA1P46926 289 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SEC13P55735 322 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ERVK-8P63133 956 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 IRX1P78414 480 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 CBLBQ13191 982 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 PYCR3Q53H96 274 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 INO80DQ53TQ3 878 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OGFRL1Q5TC84 451 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GRAMD4Q6IC98 578 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ZCCHC8Q6NZY4 707 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 GDPD4Q6W3E5 623 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TMPRSS11BQ86T26 416 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 FAM124AQ86V42 546 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 C12orf40Q86WS4 652 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 PHYKPLQ8IUZ5 450 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM102Q8N9M5 508 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OR7A2PQ8NGA2 310 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 RHEBL1Q8TAI7 183 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 DOK4Q8TEW6 326 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SMG7Q92540 1137 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ACDQ96AP0 544 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM159Q96B96 161 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TADA1Q96BN2 335 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 FAM120BQ96EK7 910 aaKnown RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 RNF31Q96EP0 1072 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OTUB1Q96FW1 271 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 MYRFLQ96LU7 910 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 TMEM121BQ9BXQ6 578 aaPredicted RBP5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ING2Q9H160 280 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 C11orf49Q9H6J7 331 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 AIG1Q9NVV5 245 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SPASTQ9UBP0 616 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ADGRE2Q9UHX3 823 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 ANAPC2Q9UJX6 822 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 SARDHQ9UL12 918 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 OGDHLQ9ULD0 1010 aa5.47□□□□□ -1.53
LIMA1-215ENST00000552823 PTPRDP23468 1912 aa5.46□□□□□ -1.53
LIMA1-215ENST00000552823 ABHD14A-ACY1A0A1B0GW23 586 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 TMX2-CTNND1H3BSU7 103 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 K7EPI3 171 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 GREM1O60565 184 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 PRKD3O94806 890 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 POP4O95707 220 aaKnown RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CXCL10P02778 98 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CTSAP10619 480 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 TNFRSF1BP20333 461 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 S100A3P33764 101 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 INHBCP55103 352 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 TRAF3Q13114 568 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SIM2Q14190 667 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 HERC3Q15034 1050 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF284Q2VY69 593 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 ARHGAP15Q53QZ3 475 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CACHD1Q5VU97 1274 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 NEK5Q6P3R8 708 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 NECAB2Q7Z6G3 386 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 KLHDC8BQ8IXV7 354 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 RAVER1Q8IY67 606 aaKnown RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CLECL1Q8IZS7 167 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 C10orf111Q8N326 155 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 DTWD1Q8N5C7 304 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SGCDQ92629 289 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SH3KBP1Q96B97 665 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 RHBDF1Q96CC6 855 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CGREF1Q99674 301 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 MACROD1Q9BQ69 325 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SORBS1Q9BX66 1292 aaKnown RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SPHK2Q9NRA0 654 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 SDR39U1Q9NRG7 319 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 TMEM181Q9P2C4 612 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 PDP2Q9P2J9 529 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 ZNF451Q9Y4E5 1061 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 ANKRD36A6QL64 1941 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CHD5Q8TDI0 1954 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 NOTCH4Q99466 2003 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 CACNA1CQ13936 2221 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 PRSS51A0A1B0GVH4 220 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 MANBAO00462 879 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 HTRA2O43464 458 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 RGS14O43566 566 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 HS6ST1O60243 411 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 FZD6O60353 706 aa5.46□□□□□ -1.54
LIMA1-215ENST00000552823 NME6O75414 186 aaPredicted RBP5.46□□□□□ -1.54
LIMA1-215ENST00000552823 LDLRP01130 860 aa5.46□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms