RNA–Protein interactions for RNA: ENST00000544547.5

LIMS1-215, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 4,461 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-215ENST00000544547 MSANTD3Q96H12 275 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 APOLD1Q96LR9 279 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 MLPHQ9BV36 600 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 EMILIN2Q9BXX0 1053 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 BCO2Q9BYV7 579 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 KCTD3Q9Y597 815 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 EFCAB14O75071 495 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 OTCP00480 354 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 CRHBPP24387 322 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 PBLDP30039 288 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 GNPDA1P46926 289 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 CAMK2GQ13555 558 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 RAPSNQ13702 412 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 TSTQ16762 297 aaKnown RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 AGAP7PQ5VUJ5 663 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 KIAA0930Q6ICG6 404 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 ARMC6Q6NXE6 501 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 ERICH5Q6P6B1 374 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 DOK6Q6PKX4 331 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 TIGD4Q8IY51 512 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 LIX1Q8N485 282 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 MINDY1Q8N5J2 469 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 SGCDQ92629 289 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 AGO3Q9H9G7 860 aaKnown RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 PRDM8Q9NQV8 689 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 DUS2Q9NX74 493 aaKnown RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 MRPL39Q9NYK5 338 aaKnown RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 MKLN1Q9UL63 735 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF490Q9ULM2 529 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 TNPO3Q9Y5L0 923 aaKnown RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 TEX28O15482 410 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 DFNA5O60443 496 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 UPK1BO75841 260 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 GOT2P00505 430 aaKnown RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 GRM5P41594 1212 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 APLP1P51693 650 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 C5orf22Q49AR2 442 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 PAGE3Q5JUK9 113 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 OR4K2Q8NGD2 314 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 SLC35F5Q8WV83 523 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 RTP4Q96DX8 246 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 SMARCD1Q96GM5 515 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 CENPOQ9BU64 300 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 POLR1EQ9GZS1 481 aaKnown RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 SLC22A4Q9H015 551 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 ZBTB20Q9HC78 741 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 ARL15Q9NXU5 204 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 NUFIP1Q9UHK0 495 aaKnown RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 SMIM28A0A1B0GU29 152 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 PAGE1O75459 146 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 EPHB3P54753 998 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 OXA1LQ15070 435 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF181Q2M3W8 571 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 BHLHB9Q6PI77 547 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 JPH3Q8WXH2 748 aaPredicted RBP13.98□□□□□ -0.17
LIMS1-215ENST00000544547 C3orf30Q96M34 536 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 CFL2Q9Y281 166 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 RWDD3Q9Y3V2 267 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 CLCA3PQ9Y6N3 262 aa13.98□□□□□ -0.17
LIMS1-215ENST00000544547 TNFRSF11BO00300 401 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 PLK4O00444 970 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 C7P10643 843 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 HSD17B1P14061 328 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 AKR1A1P14550 325 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 ITGA1P56199 1179 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 SH3BP2P78314 561 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 EMX1Q04741 257 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-215ENST00000544547 MFSD10Q14728 455 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 ANGPT1Q15389 498 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 INAVAQ3KP66 663 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 OOSP2Q86WS3 158 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 ZZZ3Q8IYH5 903 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 OR7G1Q8NGA0 311 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 DNAJC5Q9H3Z4 198 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 VRTNQ9H8Y1 702 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 NECTIN3Q9NQS3 549 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 CDC7O00311 574 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 PRMT5O14744 637 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-215ENST00000544547 LEPRP48357 1165 aaKnown RBP13.97□□□□□ -0.17
LIMS1-215ENST00000544547 CDH12P55289 794 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 TECRLQ5HYJ1 363 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 CACTIN-AS1Q8N1I8 211 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 LPPQ93052 612 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 IL4I1Q96RQ9 567 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 MAT2BQ9NZL9 334 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 ADAM30Q9UKF2 790 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 SNX6Q9UNH7 406 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 PGRP06401 933 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 ZNF45Q02386 682 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 ACSM2AQ08AH3 577 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 ACSM2BQ68CK6 577 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 CES5AQ6NT32 575 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 RASSF6Q6ZTQ3 369 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 VASH1Q7L8A9 365 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-215ENST00000544547 FAM9CQ8IZT9 166 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 OR13C4Q8NGS5 318 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 MED28Q9H204 178 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 OSGEPL1Q9H4B0 414 aa13.97□□□□□ -0.17
LIMS1-215ENST00000544547 GPN2Q9H9Y4 310 aaPredicted RBP13.97□□□□□ -0.17
LIMS1-215ENST00000544547 LRTM1Q9HBL6 345 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 21.8 ms