RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 VCLP18206 1134 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 GPD1P21695 349 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 CMA1P23946 247 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 MMP11P24347 488 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 ARNTP27540 789 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 PBLDP30039 288 aaPredicted RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 RFC1P35251 1148 aaPredicted RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 ADH7P40394 386 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 PTPN9P43378 593 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 GIPRP48546 466 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 SPINT3P49223 89 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 GSK3AP49840 483 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 TNFSF10P50591 281 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 STC1P52823 247 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 BPIFB4P59827 614 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 CLCQ05315 142 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 OLIG2Q13516 323 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 STIM1Q13586 685 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 SNTB1Q13884 538 aaKnown RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 RPE65Q16518 533 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 CAMK4Q16566 473 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 RBBP7Q16576 425 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 DEFB110Q30KQ9 67 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 ANKRD20A8PQ5CZ79 823 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF569Q5MCW4 686 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 WIPI1Q5MNZ9 446 aaPredicted RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF468Q5VIY5 522 aaPredicted RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 WDR59Q6PJI9 974 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 GBP6Q6ZN66 633 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 CHSY3Q70JA7 882 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 HOOK3Q86VS8 718 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 TRAPPC5Q8IUR0 188 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 FAM20CQ8IXL6 584 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 BBS5Q8N3I7 341 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF655Q8N720 491 aaPredicted RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 LPCAT1Q8NF37 534 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 GOT1L1Q8NHS2 421 aaPredicted RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 CCHCR1Q8TD31 782 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 NSMCE1Q8WV22 266 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 NTAN1Q96AB6 310 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 RMND5BQ96G75 393 aaPredicted RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 FAM81BQ96LP2 452 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 TTC25Q96NG3 672 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 MCCC1Q96RQ3 725 aaPredicted RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 LMF1Q96S06 567 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 C11orf70Q9BRQ4 267 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 GPATCH1Q9BRR8 931 aaKnown RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 SELENOOQ9BVL4 669 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 NAA15Q9BXJ9 866 aaKnown RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 AP1M1Q9BXS5 423 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 DHX35Q9H5Z1 703 aaKnown RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 SOX17Q9H6I2 414 aaPredicted RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF160Q9HCG1 818 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 NT5MQ9NPB1 228 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 KCNJ16Q9NPI9 418 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 RMND1Q9NWS8 449 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 PKD2L2Q9NZM6 624 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 ABI3Q9P2A4 366 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 APEX2Q9UBZ4 518 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 ADAM21Q9UKJ8 722 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 RCOR1Q9UKL0 485 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 NPIPA1Q9UND3 350 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 EDARQ9UNE0 448 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 HPSEQ9Y251 543 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 MRPS2Q9Y399 296 aaKnown RBP4.6□□□□□ -1.67
LIMS1-214ENST00000542845 TTLL3Q9Y4R7 772 aa4.6□□□□□ -1.67
LIMS1-214ENST00000542845 B2RBV5 119 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PSMA7O14818 248 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 CHUKO15111 745 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 CCP110O43303 1012 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PMPCBO75439 489 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 POP7O75817 140 aaKnown RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 WDPCPO95876 746 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 CTSBP07858 339 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 ZSCAN22P10073 491 aaPredicted RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 ERCC2P18074 760 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 HLA-DPA1P20036 260 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PRDX3P30048 256 aaKnown RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 MMP13P45452 471 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 KRT85P78386 507 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 TMPRSS15P98073 1019 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 HSF1Q00613 529 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 ALDH6A1Q02252 535 aaKnown RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 GTF2H3Q13889 308 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 NFE2L1Q14494 772 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PCOLCEQ15113 449 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PCM1Q15154 2024 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 CA9Q16790 459 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 NKAIN1Q4KMZ8 207 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF789Q5FWF6 425 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 TFDP3Q5H9I0 405 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 PPP6R3Q5H9R7 873 aaPredicted RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 HENMT1Q5T8I9 393 aaKnown RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 MARC1Q5VT66 337 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 ZNF385CQ66K41 422 aaPredicted RBP4.59□□□□□ -1.67
LIMS1-214ENST00000542845 KIRREL2Q6UWL6 708 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 CDHR3Q6ZTQ4 885 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 TTLL10Q6ZVT0 673 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 C11orf96Q7Z7L8 435 aa4.59□□□□□ -1.67
LIMS1-214ENST00000542845 DOLPP1Q86YN1 238 aa4.59□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms