RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 EDAQ92838 391 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 LRRC37BQ96QE4 947 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 NUF2Q9BZD4 464 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 IPPKQ9H8X2 491 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 DLGAP2Q9P1A6 1054 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 ASF1AQ9Y294 204 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 PLEKHM1Q9Y4G2 1056 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 DOCK9Q9BZ29 2069 aa20.49■□□□□ 0.87
VPS28-208ENST00000527797 HGSO14964 777 aaPredicted RBP20.48■□□□□ 0.87
VPS28-208ENST00000527797 PI15O43692 258 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 CRCPO75575 148 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 OTCP00480 354 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 RPN2P04844 631 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 EPB42P16452 691 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 SERPINB3P29508 390 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 CLCNKAP51800 687 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 SRP54P61011 504 aaKnown RBP20.48■□□□□ 0.87
VPS28-208ENST00000527797 PDCD2Q16342 344 aaPredicted RBP20.48■□□□□ 0.87
VPS28-208ENST00000527797 PTCHD3Q3KNS1 767 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 CCSMST1Q4G0I0 132 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 CLEC6AQ6EIG7 209 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 SLC36A4Q6YBV0 504 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 GPRIN3Q6ZVF9 776 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 RD3Q7Z3Z2 195 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 SYVN1Q86TM6 617 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 PDXPQ96GD0 296 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 ABCF3Q9NUQ8 709 aa20.48■□□□□ 0.87
VPS28-208ENST00000527797 KRT87PA6NCN2 255 aa20.47■□□□□ 0.87
VPS28-208ENST00000527797 PDGFBP01127 241 aaPredicted RBP20.47■□□□□ 0.87
VPS28-208ENST00000527797 CD27P26842 260 aa20.47■□□□□ 0.87
VPS28-208ENST00000527797 RPL10P27635 214 aaKnown RBP20.47■□□□□ 0.87
VPS28-208ENST00000527797 SLC6A12P48065 614 aa20.47■□□□□ 0.87
VPS28-208ENST00000527797 RPL6Q02878 288 aaKnown RBP20.47■□□□□ 0.87
VPS28-208ENST00000527797 SLC9B1Q4ZJI4 515 aa20.47■□□□□ 0.87
VPS28-208ENST00000527797 KANK2Q63ZY3 851 aa20.47■□□□□ 0.87
VPS28-208ENST00000527797 CAPRIN2Q6IMN6 1127 aaKnown RBP20.47■□□□□ 0.87
VPS28-208ENST00000527797 MTDHQ86UE4 582 aaKnown RBP20.47■□□□□ 0.87
VPS28-208ENST00000527797 DEFB119Q8N690 84 aa20.47■□□□□ 0.87
VPS28-208ENST00000527797 TSACCQ96A04 125 aaPredicted RBP20.47■□□□□ 0.87
VPS28-208ENST00000527797 ORAI3Q9BRQ5 295 aa20.47■□□□□ 0.87
VPS28-208ENST00000527797 ATG10Q9H0Y0 220 aa20.47■□□□□ 0.87
VPS28-208ENST00000527797 AASDHPPTQ9NRN7 309 aa20.47■□□□□ 0.87
VPS28-208ENST00000527797 SPATA6Q9NWH7 488 aaPredicted RBP20.47■□□□□ 0.87
VPS28-208ENST00000527797 STOX2Q9P2F5 926 aaPredicted RBP20.47■□□□□ 0.87
VPS28-208ENST00000527797 A0A1B0GTL3 188 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 PRR19A6NJB7 356 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 MYO1CO00159 1063 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 OR7A17O14581 309 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 SCAMP1O15126 338 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 MAP3K13O43283 966 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 KATNA1O75449 491 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 WDR47O94967 919 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 THEGLP0DJG4 465 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 ARL1P40616 181 aaPredicted RBP20.46■□□□□ 0.87
VPS28-208ENST00000527797 LRP8Q14114 963 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 ZXDCQ2QGD7 858 aaPredicted RBP20.46■□□□□ 0.87
VPS28-208ENST00000527797 UGT3A2Q3SY77 523 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 AGTRAPQ6RW13 159 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 ACAD11Q709F0 780 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 FITM2Q8N6M3 262 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 PHC3Q8NDX5 983 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 OR52B6Q8NGF0 335 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 OR9A1PQ8NGU1 263 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 STON2Q8WXE9 905 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 CCT6BQ92526 530 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 RAD51AP1Q96B01 352 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 SKA1Q96BD8 255 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 KLHDC7BQ96G42 594 aa20.46■□□□□ 0.87
VPS28-208ENST00000527797 SKAP2O75563 359 aaPredicted RBP20.45■□□□□ 0.87
VPS28-208ENST00000527797 OR4F21O95013 312 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 SLC16A8O95907 504 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 PRDX3P30048 256 aaKnown RBP20.45■□□□□ 0.87
VPS28-208ENST00000527797 CCNG1P51959 295 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 BTKQ06187 659 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 ALG11Q2TAA5 492 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 CCDC121Q6ZUS5 278 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 EFL1Q7Z2Z2 1120 aaKnown RBP20.45■□□□□ 0.87
VPS28-208ENST00000527797 MILR1Q7Z6M3 343 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 ALYREFQ86V81 257 aaKnown RBP20.45■□□□□ 0.87
VPS28-208ENST00000527797 DCUN1D3Q8IWE4 304 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 SNX31Q8N9S9 440 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 PPP1R36Q96LQ0 422 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 DNAJC11Q9NVH1 559 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 CIDEBQ9UHD4 219 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 ZFP69BQ9UJL9 534 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 ZNF225Q9UK10 706 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 WDR37Q9Y2I8 494 aa20.45■□□□□ 0.87
VPS28-208ENST00000527797 MEI4A8MW99 385 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 CCDC22O60826 627 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 KIAA0754O94854 1291 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 RASGRP1O95267 797 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 TNFP01375 233 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 JUNP05412 331 aaKnown RBP20.45■□□□□ 0.86
VPS28-208ENST00000527797 UROSP10746 265 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 IMPA1P29218 277 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 FOXA1P55317 472 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 ERVPABLB-1P60509 514 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 TUBB3Q13509 450 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 HID1Q8IV36 788 aa20.45■□□□□ 0.86
VPS28-208ENST00000527797 SLC22A18ASQ8N1D0 253 aa20.45■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 58.5 ms