RNA–Protein interactions for RNA: ENST00000514987.5

NUP54-217, Transcript of nucleoporin 54, humanhuman

TSL 2 BASIC

Gene NUP54, Length 1,563 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-217ENST00000514987 TMCO2Q7Z6W1 182 aaPredicted RBP14.53□□□□□ -0.08
NUP54-217ENST00000514987 EPHX4Q8IUS5 362 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 RIMKLAQ8IXN7 391 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 RGL4Q8IZJ4 473 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 ADGRG2Q8IZP9 1017 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 LIX1Q8N485 282 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 METTL25Q8N6Q8 603 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 ITFG1Q8TB96 612 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 ASB11Q8WXH4 323 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 VOPP1Q96AW1 172 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 CHID1Q9BWS9 393 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 RBM38Q9H0Z9 239 aaKnown RBP14.53□□□□□ -0.08
NUP54-217ENST00000514987 CAAP1Q9H8G2 361 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 SMPD3Q9NY59 655 aaPredicted RBP14.53□□□□□ -0.08
NUP54-217ENST00000514987 TBC1D14Q9P2M4 693 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 NFKBIL1Q9UBC1 381 aaPredicted RBP14.53□□□□□ -0.08
NUP54-217ENST00000514987 TMED5Q9Y3A6 229 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 PLXNB3Q9ULL4 1909 aa14.53□□□□□ -0.08
NUP54-217ENST00000514987 ZFC3H1O60293 1989 aaKnown RBP14.52□□□□□ -0.08
NUP54-217ENST00000514987 A0A087WXM4 84 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 VILLO15195 856 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 GSTA4O15217 222 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 CLOCKO15516 846 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 RSL1D1O76021 490 aaKnown RBP14.52□□□□□ -0.08
NUP54-217ENST00000514987 SCELO95171 688 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 C1SP09871 688 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 ATP1B2P14415 290 aaPredicted RBP14.52□□□□□ -0.08
NUP54-217ENST00000514987 LHCGRP22888 699 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 VIPR1P32241 457 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 CAPGP40121 348 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 RPS9P46781 194 aaKnown RBP14.52□□□□□ -0.08
NUP54-217ENST00000514987 ALDH3B2P48448 385 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 DGKQP52824 942 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 EPHA5P54756 1037 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 B4GALNT1Q00973 533 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 CHRNB3Q05901 458 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 KCNC3Q14003 757 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 BOP1Q14137 746 aaKnown RBP14.52□□□□□ -0.08
NUP54-217ENST00000514987 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.52□□□□□ -0.08
NUP54-217ENST00000514987 ATG9BQ674R7 924 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 ELMSAN1Q6PJG2 1045 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 DHRSXQ8N5I4 330 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 FAM47BQ8NA70 645 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 OR2T12Q8NG77 320 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 MCOLN3Q8TDD5 553 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 GTF2H4Q92759 462 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 ZNF583Q96ND8 569 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 HBEGFQ99075 208 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 TRIM8Q9BZR9 551 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 RMND5AQ9H871 391 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 B4GALT6Q9UBX8 382 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 PDE10AQ9Y233 779 aa14.52□□□□□ -0.08
NUP54-217ENST00000514987 FAM149AA5PLN7 773 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 TRIM64CA6NLI5 447 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 H0YAE9 185 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 DLGAP1O14490 977 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 FTH1P02794 183 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 UGT2B4P06133 528 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 PGRP06401 933 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 SLC6A12P48065 614 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 CLDN8P56748 225 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 CYP4F3Q08477 520 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 FAM174BQ3ZCQ3 159 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 USP39Q53GS9 565 aaKnown RBP14.51□□□□□ -0.09
NUP54-217ENST00000514987 TTC33Q6PID6 262 aaPredicted RBP14.51□□□□□ -0.09
NUP54-217ENST00000514987 MSANTD1Q6ZTZ1 278 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 RALGPS2Q86X27 583 aaPredicted RBP14.51□□□□□ -0.09
NUP54-217ENST00000514987 TMEM25Q86YD3 366 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 DTWD1Q8N5C7 304 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 L3MBTL4Q8NA19 623 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 FAM110BQ8TC76 370 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 IRF7Q92985 503 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 CMTM7Q96FZ5 175 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 RNF145Q96MT1 663 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 BBS2Q9BXC9 721 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 ELOVL6Q9H5J4 265 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.51□□□□□ -0.09
NUP54-217ENST00000514987 IRAK3Q9Y616 596 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 PIKFYVEQ9Y2I7 2098 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 CCDC160A6NGH7 325 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 GFYI3L273 518 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 PDLIM1O00151 329 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 BNIP3LO60238 219 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 UGDHO60701 494 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 OR6B1O95007 311 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 PRSS23O95084 383 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 BCKDHAP12694 445 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 CSF2RAP15509 400 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 GJA1P17302 382 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 PTPN2P17706 415 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 NNMTP40261 264 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 MAPK9P45984 424 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 MTPNP58546 118 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 RPS14P62263 151 aaKnown RBP14.51□□□□□ -0.09
NUP54-217ENST00000514987 ESRRGP62508 458 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 HMGCS1Q01581 520 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 PTGR1Q14914 329 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 RUNDC3AQ59EK9 446 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 SGO1Q5FBB7 561 aa14.51□□□□□ -0.09
NUP54-217ENST00000514987 ABRAXAS1Q6UWZ7 409 aa14.51□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms