RNA–Protein interactions for RNA: ENST00000488520.5

USP4-213, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3

Gene USP4, Length 1,155 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-213ENST00000488520 AURKAO14965 403 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 DEAF1O75398 565 aaPredicted RBP8.56□□□□□ -1.04
USP4-213ENST00000488520 TUBBP07437 444 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 BPIP17213 487 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 ITGALP20701 1170 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 CSF2RBP32927 897 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 TRIM23P36406 574 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 POLD2P49005 469 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 ILF3Q12906 894 aaKnown RBP eCLIP8.56□□□□□ -1.04
USP4-213ENST00000488520 GPR33Q49SQ1 333 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 AARS2Q5JTZ9 985 aaKnown RBP8.56□□□□□ -1.04
USP4-213ENST00000488520 FNBP1LQ5T0N5 605 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 DCAF12Q5T6F0 453 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 ATP1A1-AS1Q5TC04 95 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 ANKS6Q68DC2 871 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 DOK6Q6PKX4 331 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 FAM151BQ6UXP7 276 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 CAND1Q86VP6 1230 aaKnown RBP8.56□□□□□ -1.04
USP4-213ENST00000488520 HEATR4Q86WZ0 1026 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 C17orf82Q86X59 251 aaPredicted RBP8.56□□□□□ -1.04
USP4-213ENST00000488520 ZBED8Q8IZ13 594 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 NAGSQ8N159 534 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 TTC30BQ8N4P2 665 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 FAM26EQ8N5C1 309 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 AGBL5Q8NDL9 886 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 GPR26Q8NDV2 337 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 OR13C4Q8NGS5 318 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 OR4L1Q8NH43 312 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 HEXDCQ8WVB3 486 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 PEX13Q92968 403 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 SCAMP4Q969E2 229 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 HDAC10Q969S8 669 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 ULK4Q96C45 1275 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 CDKN2AIPNLQ96HQ2 116 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 CATSPER2Q96P56 530 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 EBNA1BP2Q99848 306 aaKnown RBP8.56□□□□□ -1.04
USP4-213ENST00000488520 GSDMCQ9BYG8 508 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 B3GNT4Q9C0J1 378 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 RASSF4Q9H2L5 321 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 GPN2Q9H9Y4 310 aaPredicted RBP8.56□□□□□ -1.04
USP4-213ENST00000488520 MRM3Q9HC36 420 aaKnown RBP8.56□□□□□ -1.04
USP4-213ENST00000488520 SAYSD1Q9NPB0 183 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 PPANQ9NQ55 473 aaKnown RBP8.56□□□□□ -1.04
USP4-213ENST00000488520 SYBUQ9NX95 663 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 ZC3H7BQ9UGR2 993 aaKnown RBP8.56□□□□□ -1.04
USP4-213ENST00000488520 CRLS1Q9UJA2 301 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 TUBD1Q9UJT1 453 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 SUFUQ9UMX1 484 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 SOX13Q9UN79 622 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 PCDHGA3Q9Y5H0 932 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 ST14Q9Y5Y6 855 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 RPS6KL1Q9Y6S9 549 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 MYO9AB2RTY4 2548 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 NOTCH2Q04721 2471 aa8.56□□□□□ -1.04
USP4-213ENST00000488520 IGHV1OR21-1A0A087WYE8 117 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 FAM237BA0A1B0GVD1 139 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 ESYT3A0FGR9 886 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 CLEC18AA5D8T8 446 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 MROH6A6NGR9 719 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 INPP4BO15327 924 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 ZW10O43264 779 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 LDB2O43679 373 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 SRP72O76094 671 aaKnown RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 TMEM63AO94886 807 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 CEACAM5P06731 702 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 HOXC4P09017 264 aaPredicted RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 THRAP10827 490 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 MYCLP1P12525 358 aaPredicted RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 PGAM1P18669 254 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 MSH3P20585 1137 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 TEAD1P28347 426 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 OAS2P29728 719 aaKnown RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 AKT1P31749 480 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 MC4RP32245 332 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 PHBP35232 272 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 ELK3P41970 407 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 GPR3P46089 330 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 MLLT10P55197 1068 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 DCDC1P59894 354 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 CRADDP78560 199 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 CACNG1Q06432 222 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 CDC20Q12834 499 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 TRA2AQ13595 282 aaKnown RBP eCLIP8.55□□□□□ -1.04
USP4-213ENST00000488520 PTPRCAPQ14761 206 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 NR1D2Q14995 579 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 SLMAPQ14BN4 828 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 CHRNA6Q15825 494 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 SPANXN3Q5MJ09 141 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 HP1BP3Q5SSJ5 553 aaPredicted RBP8.55□□□□□ -1.04
USP4-213ENST00000488520 LDLRAP1Q5SW96 308 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 MRNIPQ6NTE8 343 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 ZNF449Q6P9G9 518 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 AFTPHQ6ULP2 937 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 CLEC18BQ6UXF7 455 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 CERS6Q6ZMG9 384 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 SNX20Q7Z614 316 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 PHYKPLQ8IUZ5 450 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 CLEC18CQ8NCF0 446 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 OR4D9Q8NGE8 314 aa8.55□□□□□ -1.04
USP4-213ENST00000488520 FBXO25Q8TCJ0 367 aa8.55□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms