RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 TBC1D3FA6NER0 549 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D3LB9A6J9 549 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TRIM3O75382 744 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D3HP0C7X1 549 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 ANXA8P13928 327 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 SIRPB2Q5JXA9 342 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D3GQ6DHY5 549 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D3CQ6IPX1 549 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TBC1D3Q8IZP1 549 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 ZNF433Q8N7K0 673 aaPredicted RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 C7orf43Q8WVR3 580 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TRNT1Q96Q11 434 aaKnown RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 CGREF1Q99674 301 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 HEPHQ9BQS7 1158 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 HIPK3Q9H422 1215 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 MOV10Q9HCE1 1003 aaKnown RBP16.15■□□□□ 0.18
COL7A1-210ENST00000487017 TELO2Q9Y4R8 837 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 AKAP12Q02952 1782 aa16.15■□□□□ 0.18
COL7A1-210ENST00000487017 RBMXL2O75526 392 aaKnown RBP16.14■□□□□ 0.18
COL7A1-210ENST00000487017 GNAZP19086 355 aa16.14■□□□□ 0.18
COL7A1-210ENST00000487017 E2F2Q14209 437 aa16.14■□□□□ 0.18
COL7A1-210ENST00000487017 PAFAH1B3Q15102 231 aaKnown RBP16.14■□□□□ 0.18
COL7A1-210ENST00000487017 CITED4Q96RK1 184 aa16.14■□□□□ 0.18
COL7A1-210ENST00000487017 WRAP53Q9BUR4 548 aaKnown RBP16.14■□□□□ 0.18
COL7A1-210ENST00000487017 IKZF2Q9UKS7 526 aa16.14■□□□□ 0.18
COL7A1-210ENST00000487017 PCDHGA3Q9Y5H0 932 aa16.14■□□□□ 0.18
COL7A1-210ENST00000487017 NIPSNAP2O75323 286 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 TMC8Q8IU68 726 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 SLC30A8Q8IWU4 369 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 ENDOVQ8N8Q3 282 aaKnown RBP16.14■□□□□ 0.17
COL7A1-210ENST00000487017 C1QTNF1Q9BXJ1 281 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 OSER1Q9NX31 292 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 FNIP2Q9P278 1114 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 PMF1-BGLAPU3KQ54 211 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 CCL16O15467 120 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 OR1F1O43749 312 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 CD36P16671 472 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 PRR5P85299 388 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 PCDH1Q08174 1060 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 MADCAM1Q13477 382 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 GRB14Q14449 540 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 TIGD6Q17RP2 521 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 FBXO42Q6P3S6 717 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 TMEM220Q6QAJ8 160 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 TMBIM1Q969X1 311 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 SLC39A3Q9BRY0 314 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 IL1RAPQ9NPH3 570 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 TAS2R7Q9NYW3 318 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 CPQQ9Y646 472 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 C9IYK1 514 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 EOMESO95936 686 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 PSMD8P48556 350 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 GJA9P57773 515 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 ADAM17P78536 824 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 PLPP4Q5VZY2 271 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 CLIP4Q8N3C7 705 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 LRRC15Q8TF66 581 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 SNX33Q8WV41 574 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 SHISA4Q96DD7 197 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 CKLFQ9UBR5 152 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 STOML2Q9UJZ1 356 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 RWDD3Q9Y3V2 267 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 TYROBPO43914 113 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 CBFBQ13951 182 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 UFD1Q92890 307 aa16.14■□□□□ 0.17
COL7A1-210ENST00000487017 H3BSA7 217 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 SCGNO76038 276 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 SNX4O95219 450 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 PCCBP05166 539 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 CMPK1P30085 196 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 DNAJA1P31689 397 aaKnown RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 PPP2R2BQ00005 443 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 SLC10A7Q0GE19 358 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 NPTX1Q15818 432 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 PRR23BQ6ZRT6 265 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 ARL14EPQ8N8R7 260 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 CDKN2AIPNLQ96HQ2 116 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 MTRRQ9UBK8 725 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 PDPK1O15530 556 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 TBX1O43435 398 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 BCAS2O75934 225 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 PRPS1L1P21108 318 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 NT5EP21589 574 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 ZNF155Q12901 538 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 PLEKHG6Q3KR16 790 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 IQCCQ4KMZ1 466 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 KLHL22Q53GT1 634 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 FAM182AQ5T1J6 154 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 CDCA2Q69YH5 1023 aaPredicted RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 NPAS4Q8IUM7 802 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 SLC35G5Q96KT7 338 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 SLC2A6Q9UGQ3 507 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 COLEC10Q9Y6Z7 277 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 RHDQ02161 417 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 RBM23Q86U06 439 aaKnown RBP16.13■□□□□ 0.17
COL7A1-210ENST00000487017 OR10G2Q8NGC3 310 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 GSDMCQ9BYG8 508 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 TVP23BQ9NYZ1 205 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 ACTR3BQ9P1U1 418 aa16.13■□□□□ 0.17
COL7A1-210ENST00000487017 RORCP51449 518 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms