RNA–Protein interactions for RNA: ENST00000486023.1

COL6A1-204, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 2

Gene COL6A1, Length 968 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-204ENST00000486023 CRYL1Q9Y2S2 319 aa17.11■□□□□ 0.33
COL6A1-204ENST00000486023 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP17.1■□□□□ 0.33
COL6A1-204ENST00000486023 TMEM150CB9EJG8 249 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 PHF2O75151 1096 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 TMEM63AO94886 807 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 MT-ND3P03897 115 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 F7P08709 466 aaPredicted RBP17.1■□□□□ 0.33
COL6A1-204ENST00000486023 PAMP19021 973 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 SHMT2P34897 504 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 NFATC3Q12968 1075 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 MAP7Q14244 749 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 TAX1BP1Q86VP1 789 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 BPHLQ86WA6 291 aaPredicted RBP17.1■□□□□ 0.33
COL6A1-204ENST00000486023 OR5K2Q8NHB8 316 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 MR1Q95460 341 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 ZNF501Q96CX3 271 aaPredicted RBP17.1■□□□□ 0.33
COL6A1-204ENST00000486023 TRAPPC9Q96Q05 1148 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 LHX9Q9NQ69 397 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 PCDHB3Q9Y5E6 796 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 MAD1L1Q9Y6D9 718 aa17.1■□□□□ 0.33
COL6A1-204ENST00000486023 SDR42E2A6NKP2 422 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 PFDN6O15212 129 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 CHRM5P08912 532 aaPredicted RBP17.09■□□□□ 0.33
COL6A1-204ENST00000486023 TPBGLP0DKB5 382 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 UGT2B7P16662 529 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 CHRM3P20309 590 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 ARNTP27540 789 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 AOAHP28039 575 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 OAS2P29728 719 aaKnown RBP17.09■□□□□ 0.33
COL6A1-204ENST00000486023 CCR10P46092 362 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 GNG11P61952 73 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 CDC20Q12834 499 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 DHX34Q14147 1143 aaKnown RBP17.09■□□□□ 0.33
COL6A1-204ENST00000486023 CYP1B1Q16678 543 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 SPESP1Q6UW49 350 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 OTOAQ7RTW8 1153 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 FAM20CQ8IXL6 584 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 SLC22A15Q8IZD6 547 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 OR1L3Q8NH93 324 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 ACTRT1Q8TDG2 376 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 GRK7Q8WTQ7 553 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 CT55Q8WUE5 264 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 ZNF669Q96BR6 464 aaPredicted RBP17.09■□□□□ 0.33
COL6A1-204ENST00000486023 CLIP3Q96DZ5 547 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 IL17FQ96PD4 163 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 PANX3Q96QZ0 392 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 RUFY1Q96T51 708 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 P2RY12Q9H244 342 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 MRM3Q9HC36 420 aaKnown RBP17.09■□□□□ 0.33
COL6A1-204ENST00000486023 IRAK4Q9NWZ3 460 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 RUVBL2Q9Y230 463 aaKnown RBP17.09■□□□□ 0.33
COL6A1-204ENST00000486023 BTRCQ9Y297 605 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 CFAP46Q8IYW2 2715 aa17.09■□□□□ 0.33
COL6A1-204ENST00000486023 CDC14CA4D256 554 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 CTAGE9A4FU28 777 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 KDM1AO60341 852 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 CPNE3O75131 537 aaKnown RBP17.08■□□□□ 0.32
COL6A1-204ENST00000486023 GPC4O75487 556 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 CYP2A7P20853 494 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 NFKB2Q00653 900 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 MC1RQ01726 317 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 DNASE1L3Q13609 305 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 THOC5Q13769 683 aaKnown RBP17.08■□□□□ 0.32
COL6A1-204ENST00000486023 DEFB110Q30KQ9 67 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 ANKRD20A4Q4UJ75 823 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 DNAJC21Q5F1R6 531 aaKnown RBP17.08■□□□□ 0.32
COL6A1-204ENST00000486023 NEPROQ6NW34 567 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 TTC23LQ6PF05 361 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 CARFQ8N187 725 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 SERPINB12Q96P63 405 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 FCRL4Q96PJ5 515 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 OR2A14Q96R47 310 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 TWSG1Q9GZX9 223 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 DDX47Q9H0S4 455 aaKnown RBP17.08■□□□□ 0.32
COL6A1-204ENST00000486023 SERTAD3Q9UJW9 196 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 SLC39A10Q9ULF5 831 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 CDYLQ9Y232 598 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 KLHL20Q9Y2M5 609 aa17.08■□□□□ 0.32
COL6A1-204ENST00000486023 FASNP49327 2511 aaKnown RBP17.07■□□□□ 0.32
COL6A1-204ENST00000486023 NIPSNAP2O75323 286 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 RPN2P04844 631 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 KLK3P07288 261 aaPredicted RBP17.07■□□□□ 0.32
COL6A1-204ENST00000486023 MAGEA6P43360 314 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 RPS18P62269 152 aaKnown RBP17.07■□□□□ 0.32
COL6A1-204ENST00000486023 CTSL3PQ5NE16 218 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 CNSTQ6PJW8 725 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 CDHR3Q6ZTQ4 885 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 LRRC6Q86X45 466 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 KLHL7Q8IXQ5 586 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 SLC38A9Q8NBW4 561 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 CATSPER2Q96P56 530 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 FAM117AQ9C073 453 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 XAB2Q9HCS7 855 aaKnown RBP17.07■□□□□ 0.32
COL6A1-204ENST00000486023 OR6C2Q9NZP2 312 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 CAMSAP3Q9P1Y5 1249 aaPredicted RBP17.07■□□□□ 0.32
COL6A1-204ENST00000486023 ASIC3Q9UHC3 531 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 KCND3Q9UK17 655 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 NEU2Q9Y3R4 380 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 NFS1Q9Y697 457 aa17.07■□□□□ 0.32
COL6A1-204ENST00000486023 MAGEB16A2A368 324 aa17.06■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms