RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 BHMG1C9JSJ3 638 aaPredicted RBP20.85■□□□□ 0.93
USP40-215ENST00000484528 QSOX1O00391 747 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 ZNF749O43361 778 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 GAS8O95995 478 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 CAPN1P07384 714 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 SHMT2P34897 504 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 TSTD2Q5T7W7 516 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 AFTPHQ6ULP2 937 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 SLC13A5Q86YT5 568 aaPredicted RBP20.85■□□□□ 0.93
USP40-215ENST00000484528 C19orf47Q8N9M1 422 aaKnown RBP20.85■□□□□ 0.93
USP40-215ENST00000484528 ADAMTS17Q8TE56 1095 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 SLC25A23Q9BV35 468 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 NLNQ9BYT8 704 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 ING2Q9H160 280 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 RAB6BQ9NRW1 208 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 SERTAD3Q9UJW9 196 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 TCFL5Q9UL49 500 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 GUCA1BQ9UMX6 200 aa20.85■□□□□ 0.93
USP40-215ENST00000484528 SLC5A10A0PJK1 596 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 E7EQ34 232 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 HCRTR1O43613 425 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 CHRM5P08912 532 aaPredicted RBP20.84■□□□□ 0.93
USP40-215ENST00000484528 RAB40ALP0C0E4 278 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 OR56A5P0C7T3 313 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 TPBGLP0DKB5 382 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 STIP1P31948 543 aaKnown RBP20.84■□□□□ 0.93
USP40-215ENST00000484528 FDFT1P37268 417 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 PGDP52209 483 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 SEMA3AQ14563 771 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 ZIC1Q15915 447 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 GLIS1Q8NBF1 620 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 OR6P1Q8NGX9 317 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 LKAAEAR1Q8TD35 194 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 N4BP2L2Q92802 583 aaPredicted RBP20.84■□□□□ 0.93
USP40-215ENST00000484528 OR2A14Q96R47 310 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 CIDEBQ9UHD4 219 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 SPENQ96T58 3664 aaKnown RBP20.84■□□□□ 0.93
USP40-215ENST00000484528 ANKRD12Q6UB98 2062 aa20.84■□□□□ 0.93
USP40-215ENST00000484528 PRRC2CQ9Y520 2896 aaKnown RBP20.83■□□□□ 0.93
USP40-215ENST00000484528 USP9YO00507 2555 aaPredicted RBP20.83■□□□□ 0.93
USP40-215ENST00000484528 SUN1O94901 812 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 MSL3P1P0C860 447 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 CDC25BP30305 580 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 ZNF534Q76KX8 674 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 TBC1D21Q8IYX1 336 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 GPR135Q8IZ08 494 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 RNF10Q8N5U6 811 aaKnown RBP20.83■□□□□ 0.93
USP40-215ENST00000484528 OR5K2Q8NHB8 316 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 FLVCR1-AS1Q8TAF5 88 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 MIB2Q96AX9 1013 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 TCAF1Q9Y4C2 921 aa20.83■□□□□ 0.93
USP40-215ENST00000484528 SPTBN1Q01082 2364 aaKnown RBP20.83■□□□□ 0.93
USP40-215ENST00000484528 SHANK1Q9Y566 2161 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 OR2B3O76000 313 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 TMEM63AO94886 807 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 APRTP07741 180 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 CTSBP07858 339 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 ZSCAN5DPP0CG00 497 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 ADRA1DP25100 572 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 PEBP1P30086 187 aaKnown RBP20.82■□□□□ 0.92
USP40-215ENST00000484528 NCF4Q15080 339 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 C1orf189Q5VU69 101 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 LDB1Q86U70 411 aaPredicted RBP20.82■□□□□ 0.92
USP40-215ENST00000484528 VRK3Q8IV63 474 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 FAM20CQ8IXL6 584 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 CCDC89Q8N998 374 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 LMNTD1Q8N9Z9 388 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 OR4L1Q8NH43 312 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 RANBP9Q96S59 729 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 SPRTNQ9H040 489 aaPredicted RBP20.82■□□□□ 0.92
USP40-215ENST00000484528 CASS4Q9NQ75 786 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 POLG2Q9UHN1 485 aa20.82■□□□□ 0.92
USP40-215ENST00000484528 A0A0J9YY10 115 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 IQCF5A8MTL0 148 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 ISM1B1AKI9 464 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 C9J4A7 227 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 CBSLP0DN79 551 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 CCR7P32248 378 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 CBSP35520 551 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 PRAMEP78395 509 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 HSPA14Q0VDF9 509 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 UBAP2LQ14157 1087 aaKnown RBP20.81■□□□□ 0.92
USP40-215ENST00000484528 NADK2Q4G0N4 442 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 FASTKD1Q53R41 847 aaKnown RBP20.81■□□□□ 0.92
USP40-215ENST00000484528 LYPLAL1Q5VWZ2 237 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 ZNF385CQ66K41 422 aaPredicted RBP20.81■□□□□ 0.92
USP40-215ENST00000484528 CFAP61Q8NHU2 1237 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 TTC1Q99614 292 aa20.81■□□□□ 0.92
USP40-215ENST00000484528 FRMD8P1Q9BZ68 369 aaPredicted RBP20.81■□□□□ 0.92
USP40-215ENST00000484528 PCDHGA9Q9Y5G4 932 aaKnown RBP20.81■□□□□ 0.92
USP40-215ENST00000484528 A6NL46 340 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 GABRA4P48169 554 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 CRADDP78560 199 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 ACVR1Q04771 509 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 ATP1A4Q13733 1029 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 SLC9A5Q14940 896 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 KCTD19Q17RG1 926 aaPredicted RBP20.8■□□□□ 0.92
USP40-215ENST00000484528 TAX1BP1Q86VP1 789 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 KRT222Q8N1A0 295 aa20.8■□□□□ 0.92
USP40-215ENST00000484528 C2orf73Q8N5S3 287 aaPredicted RBP20.8■□□□□ 0.92
Retrieved 100 of 20,778 RNA–protein pairs in 49.6 ms