RNA–Protein interactions for RNA: ENST00000479532.1

SF3B1-209, Transcript of splicing factor 3b subunit 1, humanhuman

TSL 2

Gene SF3B1, Length 587 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B1-209ENST00000479532 WDR26Q9H7D7 661 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 CARS2Q9HA77 564 aaKnown RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 MRM3Q9HC36 420 aaKnown RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 TM9SF3Q9HD45 589 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 BPIFA1Q9NP55 256 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PHPT1Q9NRX4 125 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 NFKBIL1Q9UBC1 381 aaPredicted RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 MTRF1LQ9UGC7 380 aaKnown RBP6.11□□□□□ -1.43
SF3B1-209ENST00000479532 FBXL7Q9UJT9 491 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 PILRBQ9UKJ0 227 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ZNF281Q9Y2X9 895 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 SNX24Q9Y343 169 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 ARL5AQ9Y689 179 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 SLC30A1Q9Y6M5 507 aa6.11□□□□□ -1.43
SF3B1-209ENST00000479532 NUMA1Q14980 2115 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 RALGAPA1Q6GYQ0 2036 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 SCN8AQ9UQD0 1980 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 MYLKQ15746 1914 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 GLYATL1P3A0A0U1RQE8 302 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TCRBV7S3A2A0A539 114 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 HMGB1P1B2RPK0 211 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 PROB1E7EW31 1015 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 F8W8V4 182 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 VILLO15195 856 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 NUAK1O60285 661 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 DFNA5O60443 496 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TMEM63AO94886 807 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ATP6V1G2O95670 118 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TTC4O95801 387 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 THEGLP0DJG4 465 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ITGALP20701 1170 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 MGAT1P26572 445 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TEAD1P28347 426 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ALDH3A1P30838 453 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 LSP1P33241 339 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 RPL21P46778 160 aaKnown RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 DRG2P55039 364 aaKnown RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 GUCY2DQ02846 1103 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 DPTQ07507 201 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 OLIG2Q13516 323 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 CUL1Q13616 776 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 GTF2H3Q13889 308 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 HLTFQ14527 1009 aaKnown RBP eCLIP6.1□□□□□ -1.437e-10■□□□□ 8.9
SF3B1-209ENST00000479532 CDKN3Q16667 212 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 WSCD2Q2TBF2 565 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 CERCAMQ5T4B2 595 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TSTD2Q5T7W7 516 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 LYPLAL1Q5VWZ2 237 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ANKRD22Q5VYY1 191 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 HIBCHQ6NVY1 386 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 PNCKQ6P2M8 343 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ATG14Q6ZNE5 492 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 Q6ZVL8 140 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TECPR1Q7Z6L1 1165 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 MYLK4Q86YV6 388 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 PHYKPLQ8IUZ5 450 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 CBARPQ8N350 705 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TTC30BQ8N4P2 665 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TRAM1L1Q8N609 369 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TP53I13Q8NBR0 393 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 OR4K2Q8NGD2 314 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 GDAP1Q8TB36 358 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 DTX3LQ8TDB6 740 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 AENQ8WTP8 325 aaKnown RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 HEXDCQ8WVB3 486 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 GFM2Q969S9 779 aaKnown RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 CENPTQ96BT3 561 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ULK4Q96C45 1275 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TTC25Q96NG3 672 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 DIRC2Q96SL1 478 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 RIOK2Q9BVS4 552 aaKnown RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ABCG8Q9H221 673 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ARRDC1-AS1Q9H2J1 176 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 VCXQ9H320 206 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 VCX3BQ9H321 246 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 MMADHCQ9H3L0 296 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TMPRSS5Q9H3S3 457 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ZCCHC4Q9H5U6 513 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 RMI1Q9H9A7 625 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 EPB41L5Q9HCM4 733 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 VCX3AQ9NNX9 186 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 PARD6AQ9NPB6 346 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 FZD3Q9NPG1 666 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 GDF3Q9NR23 364 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 NLE1Q9NVX2 485 aaPredicted RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 PIH1D1Q9NWS0 290 aaKnown RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 IL17CQ9P0M4 197 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 KLHL42Q9P2K6 505 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ATXN10Q9UBB4 475 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 CD84Q9UIB8 345 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 CRLS1Q9UJA2 301 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 RIMKLBQ9ULI2 386 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TMED5Q9Y3A6 229 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TCAF1Q9Y4C2 921 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 SPO11Q9Y5K1 396 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 MAD1L1Q9Y6D9 718 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ZNF106Q9H2Y7 1883 aaKnown RBP6.1□□□□□ -1.43
SF3B1-209ENST00000479532 ABCA7Q8IZY2 2146 aa6.1□□□□□ -1.43
SF3B1-209ENST00000479532 TP53BP1Q12888 1972 aaPredicted RBP6.09□□□□□ -1.43
SF3B1-209ENST00000479532 FAM237BA0A1B0GVD1 139 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms