RNA–Protein interactions for RNA: ENST00000476903.1

CCDC88A-213, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 3

Gene CCDC88A, Length 419 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-213ENST00000476903 PRDM8Q9NQV8 689 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 FOXJ2Q9P0K8 574 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 IL17CQ9P0M4 197 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 TMEM9Q9P0T7 183 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 IMPACTQ9P2X3 320 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 CPNE7Q9UBL6 633 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 TNFRSF10DQ9UBN6 386 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 POLR3KQ9Y2Y1 108 aaPredicted RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 AAR2Q9Y312 384 aaKnown RBP6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 ATRXP46100 2492 aa6.68□□□□□ -1.34
CCDC88A-213ENST00000476903 GLYATL1P3A0A0U1RQE8 302 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 GOLGA6L9A6NEM1 432 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 LILRA5A6NI73 299 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 C2orf81A6NN90 581 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 EFCAB7A8K855 629 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 PDZK1P1A8MUH7 402 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 GOLGA6L6A8MZA4 724 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 MIF4GDA9UHW6 222 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 STMND1H3BQB6 276 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 STX7O15400 261 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 KCNN4O15554 427 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 KCNJ13O60928 360 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 AGTP01019 485 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 VIPP01282 170 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 RBP3P10745 1247 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 PYGMP11217 842 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 FGF3P11487 239 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 XRCC1P18887 633 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 IDSP22304 550 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 PSMB4P28070 264 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 MAPK9P45984 424 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 PCBP3P57721 371 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 UBE2IP63279 158 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 PDE1BQ01064 536 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 KIF5AQ12840 1032 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 TMEM115Q12893 351 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 TAF1AQ15573 450 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 TGIF1Q15583 401 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 CHRNA6Q15825 494 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 SEPT7Q16181 437 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 KHDC1Q4VXA5 237 aaKnown RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 TAF1BQ53T94 588 aaPredicted RBP6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 ANKRD20A2Q5SQ80 823 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 SNAP47Q5SQN1 464 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 MANEAQ5SRI9 462 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 ANKRD20A1Q5TYW2 823 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 ANKRD20A3Q5VUR7 823 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 GALNT18Q6P9A2 607 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 ABRAXAS1Q6UWZ7 409 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 FAM151BQ6UXP7 276 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 WASH2PQ6VEQ5 465 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 PEX26Q7Z412 305 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 GAS2L3Q86XJ1 694 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 PLXDC1Q8IUK5 500 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 TMEM139Q8IV31 216 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 ZNF547Q8IVP9 402 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 DDHD1Q8NEL9 900 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 NCSTNQ92542 709 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 ALG3Q92685 438 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 ART4Q93070 314 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 WBP1Q96G27 269 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 SPATA13Q96N96 652 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 GORASP1Q9BQQ3 440 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 FICDQ9BVA6 458 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 DDA1Q9BW61 102 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 KRTAP3-1Q9BYR8 98 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 C10orf88Q9H8K7 445 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 UCK1Q9HA47 277 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 WASH6PQ9NQA3 447 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 POT1Q9NUX5 634 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 SMOXQ9NWM0 555 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC39A1Q9NY26 324 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 PDP2Q9P2J9 529 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 SLC23A2Q9UGH3 650 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 AMFRQ9UKV5 643 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 DNAJC16Q9Y2G8 782 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 PCDHGA3Q9Y5H0 932 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 COL6A6A6NMZ7 2263 aa6.67□□□□□ -1.34
CCDC88A-213ENST00000476903 C5orf60A6NFR6 353 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 A8MU76 341 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 B4E171 279 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 GAPDHSO14556 408 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 BUD23O43709 281 aaKnown RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 UGT1A9O60656 530 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 UBOX5O94941 541 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 PRAMEF1O95521 474 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 CRTAMO95727 393 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 PRB1P04280 392 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 AMD1P17707 334 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 UGT1A6P19224 532 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 MSH3P20585 1137 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 LPOP22079 712 aaPredicted RBP6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 UGT1A1P22309 533 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 UGT1A4P22310 534 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 AKT1P31749 480 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 ADRA1AP35348 466 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 UGT1A3P35503 534 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 TSPAN7P41732 249 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 HALP42357 657 aa6.66□□□□□ -1.34
CCDC88A-213ENST00000476903 LIMS1P48059 325 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms