RNA–Protein interactions for RNA: ENST00000476085.1

MSH5-SAPCD1-205, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS ALT2 TSL 2

Gene MSH5-SAPCD1, Length 950 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-205ENST00000476085 TBC1D21Q8IYX1 336 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 DNAJC22Q8N4W6 341 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TMEM102Q8N9M5 508 aaPredicted RBP11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 Q8NA96 180 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 GALNT11Q8NCW6 608 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 FDCSPQ8NFU4 85 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 OR5K2Q8NHB8 316 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 LRRC45Q96CN5 670 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CLIP3Q96DZ5 547 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 TCTN2Q96GX1 697 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 GBP5Q96PP8 586 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 SMAD5Q99717 465 aaKnown RBP11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 HGH1Q9BTY7 390 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 DHRS4Q9BTZ2 278 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 MENTQ9BUN1 341 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 RBSNQ9H1K0 784 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 ACSS2Q9NR19 701 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 ENAMQ9NRM1 1142 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 PIH1D1Q9NWS0 290 aaKnown RBP11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 SPHK1Q9NYA1 384 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 SMARCAL1Q9NZC9 954 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 OR6C2Q9NZP2 312 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 PACSIN2Q9UNF0 486 aaPredicted RBP11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 SNX7Q9UNH6 387 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 CDYLQ9Y232 598 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 UNC79Q9P2D8 2635 aa11.84□□□□□ -0.51
MSH5-SAPCD1-205ENST00000476085 NOTCH2Q04721 2471 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 GOLGA6L9A6NEM1 432 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ERI2A8K979 691 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 E7EQ34 232 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CTSBP07858 339 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CHRM5P08912 532 aaPredicted RBP11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 HBQ1P09105 142 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 UGT2B7P16662 529 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CYP2A7P20853 494 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 MSNP26038 577 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 PEBP1P30086 187 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 STIP1P31948 543 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 PLOD1Q02809 727 aaPredicted RBP11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 PTCHD3Q3KNS1 767 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ZNF449Q6P9G9 518 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ZNF534Q76KX8 674 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 LINC00523Q86TU6 105 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 HPS6Q86YV9 775 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 UBL4BQ8N7F7 174 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 RBMXL3Q8N7X1 1067 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 C19orf47Q8N9M1 422 aaKnown RBP11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 OR52K1Q8NGK4 314 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CPT1CQ8TCG5 803 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ZNF778Q96MU6 729 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 RANBP9Q96S59 729 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 NUDT9Q9BW91 350 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 SPRTNQ9H040 489 aaPredicted RBP11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 KLHL25Q9H0H3 589 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 POLG2Q9UHN1 485 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ZNF451Q9Y4E5 1061 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 AP1M2Q9Y6Q5 423 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 NUP210LQ5VU65 1888 aa11.83□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 TTLL8A6PVC2 850 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 OR1I1O60431 355 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CNOT3O75175 753 aaKnown RBP11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 GPC4O75487 556 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 IPO7O95373 1038 aaKnown RBP11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ONECUT2O95948 504 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 FTH1P02794 183 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CBSLP0DN79 551 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 SHMT2P34897 504 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CBSP35520 551 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 GRIA1P42261 906 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 UQCRFS1P47985 274 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 SOX8P57073 446 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CDH17Q12864 832 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 GRB7Q14451 532 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 SSPNQ14714 243 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 SLC5A12Q1EHB4 618 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CCDC38Q502W7 563 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 JMJD6Q6NYC1 403 aaPredicted RBP11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 MRPL14Q6P1L8 145 aaKnown RBP11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 NAPRTQ6XQN6 538 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 TRIM73Q86UV7 250 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ATCAYQ86WG3 371 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 SYCE1Q8N0S2 351 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ELMO1Q92556 727 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 PEX13Q92968 403 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 HDAC10Q969S8 669 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 AP1M1Q9BXS5 423 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ETNK1Q9HBU6 452 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 SLC2A6Q9UGQ3 507 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ASF1AQ9Y294 204 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ITPR2Q14571 2701 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 DOPEY1Q5JWR5 2465 aa11.82□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 A0A0J9YY10 115 aa11.81□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 MAP3K7O43318 606 aa11.81□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 LIASO43766 372 aa11.81□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 FTCDO95954 541 aa11.81□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 GOT2P00505 430 aaKnown RBP11.81□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 OR56A5P0C7T3 313 aa11.81□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 CCR7P32248 378 aa11.81□□□□□ -0.52
MSH5-SAPCD1-205ENST00000476085 ATP1A4Q13733 1029 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms