RNA–Protein interactions for RNA: ENST00000469852.5

COL9A3-209, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 901 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-209ENST00000469852 VPS11Q9H270 941 aa14.38□□□□□ -0.11
COL9A3-209ENST00000469852 TRIT1Q9H3H1 467 aaKnown RBP14.38□□□□□ -0.11
COL9A3-209ENST00000469852 XKR8Q9H6D3 395 aa14.38□□□□□ -0.11
COL9A3-209ENST00000469852 MVB12BQ9H7P6 319 aa14.38□□□□□ -0.11
COL9A3-209ENST00000469852 SYTL2Q9HCH5 934 aa14.38□□□□□ -0.11
COL9A3-209ENST00000469852 ZNF358Q9NW07 568 aa14.38□□□□□ -0.11
COL9A3-209ENST00000469852 NCKIPSDQ9NZQ3 722 aa14.38□□□□□ -0.11
COL9A3-209ENST00000469852 OGFRQ9NZT2 677 aa14.38□□□□□ -0.11
COL9A3-209ENST00000469852 ICKQ9UPZ9 632 aa14.38□□□□□ -0.11
COL9A3-209ENST00000469852 HEBP2Q9Y5Z4 205 aa14.38□□□□□ -0.11
COL9A3-209ENST00000469852 CNOT1A5YKK6 2376 aaKnown RBP14.38□□□□□ -0.11
COL9A3-209ENST00000469852 ACACBO00763 2458 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 A0A1W2PQM1 296 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 LILRA5A6NI73 299 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 GOLGA8RI6L899 631 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 BTN3A1O00481 513 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 ZBTB14O43829 449 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 CDH16O75309 829 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 ALDH4A1P30038 563 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 DUSP3P51452 185 aaPredicted RBP14.37□□□□□ -0.11
COL9A3-209ENST00000469852 NOVA1P51513 510 aaKnown RBP14.37□□□□□ -0.11
COL9A3-209ENST00000469852 CLDN6P56747 220 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 CCL7P80098 99 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 BIRC2Q13490 618 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 CASP8Q14790 479 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 TSNQ15631 228 aaKnown RBP14.37□□□□□ -0.11
COL9A3-209ENST00000469852 PPP1R3AQ16821 1122 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 MBOAT1Q6ZNC8 495 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 UBE2R2Q712K3 238 aaPredicted RBP14.37□□□□□ -0.11
COL9A3-209ENST00000469852 GLRX5Q86SX6 157 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 DCUN1D3Q8IWE4 304 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 DENND1AQ8TEH3 1009 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 NAT6Q93015 286 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 PTERQ96BW5 349 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 NXNL1Q96CM4 212 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 MTBPQ96DY7 904 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 SLC38A3Q99624 504 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 ROPN1BQ9BZX4 212 aaPredicted RBP14.37□□□□□ -0.11
COL9A3-209ENST00000469852 DERL2Q9GZP9 239 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 SLC32A1Q9H598 525 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 STN1Q9H668 368 aaKnown RBP14.37□□□□□ -0.11
COL9A3-209ENST00000469852 PPCSQ9HAB8 311 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 ROPN1Q9HAT0 212 aaPredicted RBP14.37□□□□□ -0.11
COL9A3-209ENST00000469852 PCMTD2Q9NV79 361 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 LGALS13Q9UHV8 139 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 PDE10AQ9Y233 779 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 ACOT9Q9Y305 439 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 COLEC10Q9Y6Z7 277 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 CACNA1BQ00975 2339 aa14.37□□□□□ -0.11
COL9A3-209ENST00000469852 IGHV1OR21-1A0A087WYE8 117 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 A0A087X1B8 175 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 KCNK5O95279 499 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 PNLIPP16233 465 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 NDUFS1P28331 727 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 MAPK9P45984 424 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 KCNC1P48547 511 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 CFHR1Q03591 330 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 OR4D1Q15615 310 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 KRT71Q3SY84 523 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 LGSNQ5TDP6 509 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 LRRC8EQ6NSJ5 796 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 SBSNQ6UWP8 590 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 SH2D5Q6ZV89 423 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 TMPRSS9Q7Z410 1059 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 CLEC14AQ86T13 490 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 RBM12BQ8IXT5 1001 aaKnown RBP14.36□□□□□ -0.11
COL9A3-209ENST00000469852 OR4E2Q8NGC2 313 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 OR6C4Q8NGE1 309 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 RSC1A1Q92681 617 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 FOPNLQ96NB1 174 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 GPR78Q96P69 363 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 PKP4Q99569 1192 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 UCK1Q9HA47 277 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 KCNK4Q9NYG8 393 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 TLK1Q9UKI8 766 aa14.36□□□□□ -0.11
COL9A3-209ENST00000469852 ATXN7L1Q9ULK2 861 aaPredicted RBP14.36□□□□□ -0.11
COL9A3-209ENST00000469852 MYO1CO00159 1063 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 BTN3A3O00478 584 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 RFPL3O75679 317 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 DKK1O94907 266 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 CATP04040 527 aaKnown RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 MPOP05164 745 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 RPLP0P05388 317 aaKnown RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 GP1BAP07359 652 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 C8GP07360 202 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 LTA4HP09960 611 aaKnown RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 FTH1P19P0C7X4 201 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 PYGBP11216 843 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 CEACAM1P13688 526 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 TYRP1P17643 537 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 KRT15P19012 456 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 TFEBP19484 476 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 CD1CP29017 333 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 PKLRP30613 574 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 CSF2RBP32927 897 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 GPR3P46089 330 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 GLRBP48167 497 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 PPP1CAP62136 330 aa14.35□□□□□ -0.11
COL9A3-209ENST00000469852 SIM1P81133 766 aaPredicted RBP14.35□□□□□ -0.11
COL9A3-209ENST00000469852 PLCL1Q15111 1095 aa14.35□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms