RNA–Protein interactions for RNA: ENST00000427112.6

USP40-203, Transcript of ubiquitin specific peptidase 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene USP40, Length 3,744 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-203ENST00000427112 RAPGEFL1Q9UHV5 662 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 TESMINQ9Y4I5 508 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 PCDHB5Q9Y5E4 795 aa8.48□□□□□ -1.05
USP40-203ENST00000427112 NYNRINQ9P2P1 1898 aaKnown RBP8.48□□□□□ -1.05
USP40-203ENST00000427112 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP8.47□□□□□ -1.05
USP40-203ENST00000427112 TCRBV5S2A0A599 114 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 MROH6A6NGR9 719 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 FAM20BO75063 409 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 BMP10O95393 424 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ANGPTL1O95841 491 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 HTR1AP08908 422 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 CLK1P49759 484 aaKnown RBP8.47□□□□□ -1.05
USP40-203ENST00000427112 LRRC74AQ0VAA2 488 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ZNF177Q13360 481 aaPredicted RBP8.47□□□□□ -1.05
USP40-203ENST00000427112 LAIR1Q6GTX8 287 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 LCN8Q6JVE9 175 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 KIAA0408Q6ZU52 694 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 HID1Q8IV36 788 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 TBC1D21Q8IYX1 336 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 OR5AK3PQ8NH89 298 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 SLC13A3Q8WWT9 602 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 SELENOMQ8WWX9 145 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 EID2BQ96D98 161 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 SCLYQ96I15 445 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 MAGED4Q96JG8 741 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ZNF583Q96ND8 569 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ZBTB18Q99592 522 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 LRRC3Q9BY71 257 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 PRRG3Q9BZD7 231 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 SIAEQ9HAT2 523 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 RIC8BQ9NVN3 520 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ARMC1Q9NVT9 282 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 COMMD8Q9NX08 183 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 SLC25A37Q9NYZ2 338 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 PDP1Q9P0J1 537 aaPredicted RBP8.47□□□□□ -1.05
USP40-203ENST00000427112 AQP12BA6NM10 295 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 TAF4O00268 1085 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 E2F3O00716 465 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 FFAR2O15552 330 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 TBL1XO60907 577 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ULK1O75385 1050 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 SLC10A3P09131 477 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 UROSP10746 265 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 LPOP22079 712 aaPredicted RBP8.47□□□□□ -1.05
USP40-203ENST00000427112 AKT1P31749 480 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 FLT3LGP49771 235 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 BCAP31P51572 246 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ERVK-8P63133 956 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 NKX3-2P78367 333 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ADAM17P78536 824 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 IFITM3Q01628 133 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 RCAN2Q14206 197 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 MANEALQ5VSG8 457 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 LRRC8DQ7L1W4 858 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 SLC22A16Q86VW1 577 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 CYP4Z1Q86W10 505 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 AQP12AQ8IXF9 295 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 MINDY1Q8N5J2 469 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 HM13Q8TCT9 377 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 OSCP1Q8WVF1 389 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 L3HYPDHQ96EM0 354 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 BTN2A3PQ96KV6 586 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 DMRTB1Q96MA1 342 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ZNF599Q96NL3 588 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 NODALQ96S42 347 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 LINC00597Q9H2U6 94 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 CSNK1G1Q9HCP0 422 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 FAIMQ9NVQ4 179 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 MTRRQ9UBK8 725 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 TLR6Q9Y2C9 796 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 PCDHB14Q9Y5E9 798 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 CACNA1IQ9P0X4 2223 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 KRBA1A5PL33 1030 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 FAM227AF5H4B4 570 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 PSMD11O00231 422 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 TPST2O60704 377 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 MFN2O95140 757 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 PRLP01236 227 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 MT-ND2P03891 347 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 IMPDH2P12268 514 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ALOX12P18054 663 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 CRISP3P54108 245 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 MEF2AQ02078 507 aaPredicted RBP8.47□□□□□ -1.05
USP40-203ENST00000427112 ABRQ12979 859 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 NPTX1Q15818 432 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 ADRM1Q16186 407 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 CARD16Q5EG05 197 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 C6orf141Q5SZD1 244 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 MFSD14CQ5VZR4 134 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 DLEU7Q6UYE1 221 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 PLD3Q8IV08 490 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 SPPL2AQ8TCT8 520 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 BORCS5Q969J3 196 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 PGAP3Q96FM1 320 aaPredicted RBP8.47□□□□□ -1.05
USP40-203ENST00000427112 ASIC4Q96FT7 647 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 BEX2Q9BXY8 128 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 RNF38Q9H0F5 515 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 C14orf119Q9NWQ9 140 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 CLEC4EQ9ULY5 219 aa8.47□□□□□ -1.05
USP40-203ENST00000427112 LOC100130705A0A1B0GUX0 176 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 76.8 ms