RNA–Protein interactions for RNA: ENST00000421922.6

CCDC28B-202, Transcript of coiled-coil domain containing 28B, humanhuman

TSL 1 (best) BASIC

Gene CCDC28B, Length 1,415 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-202ENST00000421922 RAD51AP1Q96B01 352 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 RHBDF1Q96CC6 855 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 FBXL8Q96CD0 374 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 RMDN2Q96LZ7 410 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 ZDHHC5Q9C0B5 715 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 TMEM168Q9H0V1 697 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 NPHS2Q9NP85 383 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 GPR27Q9NS67 375 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 DNAJC28Q9NX36 388 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 MARCOQ9UEW3 520 aaPredicted RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 PTBP2Q9UKA9 531 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 TDRKHQ9Y2W6 561 aaKnown RBP16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 RAP2CQ9Y3L5 183 aa16.7■□□□□ 0.26
CCDC28B-202ENST00000421922 FANCMQ8IYD8 2048 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 SPAG17Q6Q759 2223 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 TP53BP1Q12888 1972 aaPredicted RBP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 PRR5-ARHGAP8B1AHC4 643 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 STK16O75716 305 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 MLYCDO95822 493 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 KITP10721 976 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 ACADLP28330 430 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 AFF3P51826 1226 aaKnown RBP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 CLCQ05315 142 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 EIF2B5Q13144 721 aaKnown RBP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 PCBP2Q15366 365 aaKnown RBP eCLIP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 FBXO48Q5FWF7 155 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 EEF1AKMT2Q5JPI9 291 aaKnown RBP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 METTL2BQ6P1Q9 378 aaKnown RBP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 LRRC70Q7Z2Q7 622 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 SPDYE1Q8NFV5 336 aaPredicted RBP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 OR6Y1Q8NGX8 325 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 AGR3Q8TD06 166 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 DNASE2BQ8WZ79 361 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 ATP6V1E2Q96A05 226 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 FERD3LQ96RJ6 166 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 CD244Q9BZW8 370 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 GSTO2Q9H4Y5 243 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 ZNF395Q9H8N7 513 aaPredicted RBP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 IMP3Q9NV31 184 aaKnown RBP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 SUSD2Q9UGT4 822 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 APOBEC3BQ9UH17 382 aaKnown RBP16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 PCTPQ9UKL6 214 aa16.69■□□□□ 0.26
CCDC28B-202ENST00000421922 GON4LQ3T8J9 2241 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 A0A1W2PR77 199 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 LRRC14BA6NHZ5 514 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 ZNF839A8K0R7 811 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 K7EPI3 171 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 TGDSO95455 350 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 CHRNGP07510 517 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 JUNDP17535 347 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 AK4P27144 223 aaPredicted RBP16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 HK2P52789 917 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 SF3A3Q12874 501 aaKnown RBP eCLIP16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 LCP2Q13094 533 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 GTF2H2Q13888 395 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 UAP1L1Q3KQV9 507 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 CES4AQ5XG92 561 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 PMS2CLQ68D20 193 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 GTF2H2CQ6P1K8 395 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 LAYNQ6UX15 382 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 BMP8AQ7Z5Y6 402 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 CUZD1Q86UP6 607 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 ANKS4BQ8N8V4 417 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 SNX31Q8N9S9 440 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 OR9A1PQ8NGU1 263 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 OR5K2Q8NHB8 316 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 PIWIL2Q8TC59 973 aaKnown RBP16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 TRPC4APQ8TEL6 797 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 ZNF483Q8TF39 744 aaPredicted RBP16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 THOC1Q96FV9 657 aaKnown RBP16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 SIKE1Q9BRV8 207 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 HGH1Q9BTY7 390 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 C1QTNF3Q9BXJ4 246 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 SHCBP1LQ9BZQ2 653 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 SEMA4BQ9NPR2 832 aaPredicted RBP16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 LNPEPQ9UIQ6 1025 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 EPB41L3Q9Y2J2 1087 aaPredicted RBP16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 CFAP20Q9Y6A4 193 aaKnown RBP16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 SLCO1B1Q9Y6L6 691 aa16.68■□□□□ 0.26
CCDC28B-202ENST00000421922 SLCO1B7G3V0H7 640 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 KATNA1O75449 491 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 WDR47O94967 919 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 WNT1P04628 370 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 SLC2A4P14672 509 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 MPSTP25325 297 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 CNR2P34972 360 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 CCR10P46092 362 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 RPL14P50914 215 aaKnown RBP16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 CDH13P55290 713 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 GALNT1Q10472 559 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 TSTA3Q13630 321 aaPredicted RBP16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 ZNF542PQ5EBM4 170 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 SH2D4BQ5SQS7 431 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 CAPRIN2Q6IMN6 1127 aaKnown RBP16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 XKR5Q6UX68 686 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 RPS27LQ71UM5 84 aaKnown RBP16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 TAF8Q7Z7C8 310 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 RASGRP3Q8IV61 690 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 SYTL1Q8IYJ3 562 aa16.67■□□□□ 0.26
CCDC28B-202ENST00000421922 TBC1D21Q8IYX1 336 aa16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms