RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 ZNF451Q9Y4E5 1061 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 MITFO75030 526 aaPredicted RBP13.09□□□□□ -0.31
VPS54-203ENST00000409558 SERPINA1P01009 418 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 HLA-EP13747 358 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 HOXB8P17481 243 aaPredicted RBP13.09□□□□□ -0.31
VPS54-203ENST00000409558 CDH2P19022 906 aaPredicted RBP13.09□□□□□ -0.31
VPS54-203ENST00000409558 ACRV1P26436 265 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 CDKN2CP42773 168 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 ZCCHC8Q6NZY4 707 aaKnown RBP13.09□□□□□ -0.31
VPS54-203ENST00000409558 ZFAND4Q86XD8 727 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 STK40Q8N2I9 435 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 AMBNQ9NP70 447 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 SH3BP4Q9P0V3 963 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 LEFTY2O00292 366 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 STX16O14662 325 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 STATHP02808 62 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 ITGB8P26012 769 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 S100A3P33764 101 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 RFC2P35250 354 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 CCR2P41597 374 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 PMS2P3Q13401 168 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 LSAMPQ13449 338 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 NAE1Q13564 534 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 NKG7Q16617 165 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 DOK6Q6PKX4 331 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 NXPE1Q8N323 547 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 TFAP2CQ92754 450 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 RASSF1Q9NS23 344 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 CFAP20Q9Y6A4 193 aaKnown RBP13.09□□□□□ -0.31
VPS54-203ENST00000409558 SRCP12931 536 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 METAP1P53582 386 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 BNIP2Q12982 314 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 CHIT1Q13231 466 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 FAM98BQ52LJ0 330 aaKnown RBP13.09□□□□□ -0.31
VPS54-203ENST00000409558 ARSIQ5FYB1 569 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 PPP4R4Q6NUP7 873 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 PRMT9Q6P2P2 845 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 KCTD8Q6ZWB6 473 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 ZDHHC13Q8IUH4 622 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 RIN3Q8TB24 985 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 THAP11Q96EK4 314 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 CD244Q9BZW8 370 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 SPG21Q9NZD8 308 aa13.09□□□□□ -0.31
VPS54-203ENST00000409558 TTC34A8MYJ7 566 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 K7EPI3 171 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 GAPDHSO14556 408 aaPredicted RBP13.08□□□□□ -0.32
VPS54-203ENST00000409558 ANXA6P08133 673 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 BCKDHAP12694 445 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 TNFRSF1BP20333 461 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 PAX3P23760 479 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 CALRP27797 417 aaKnown RBP13.08□□□□□ -0.32
VPS54-203ENST00000409558 CLCN2P51788 898 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 CYP4F3Q08477 520 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 ASTLQ6HA08 431 aaPredicted RBP13.08□□□□□ -0.32
VPS54-203ENST00000409558 SZRD1Q7Z422 152 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 CARM1Q86X55 608 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 DCAF4L2Q8NA75 395 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 RHBDF1Q96CC6 855 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 BDH2Q9BUT1 245 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 TRIM54Q9BYV2 358 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 RIBC2Q9H4K1 309 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 PDE10AQ9Y233 779 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 PTPRDP23468 1912 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 TOR1BO14657 336 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 OPN1SWP03999 348 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 AGXTP21549 392 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 BDKRB1P46663 353 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 CCT8P50990 548 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 IRF8Q02556 426 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 TEAD2Q15562 447 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 AASDHQ4L235 1098 aaPredicted RBP13.08□□□□□ -0.32
VPS54-203ENST00000409558 XKR6Q5GH73 641 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 TMTC4Q5T4D3 741 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 GPRC6AQ5T6X5 926 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 CLECL1Q8IZS7 167 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 B4GALNT2Q8NHY0 566 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 P2RY13Q9BPV8 354 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 SUV39H2Q9H5I1 410 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 TNPO3Q9Y5L0 923 aaKnown RBP13.08□□□□□ -0.32
VPS54-203ENST00000409558 NINQ8N4C6 2090 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 HIDE1A8MVS5 230 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 DLGAP1O14490 977 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 XPNPEP2O43895 674 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 FTH1P02794 183 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 ZFP36L2P47974 494 aaKnown RBP13.08□□□□□ -0.32
VPS54-203ENST00000409558 SNRPD1P62314 119 aaKnown RBP13.08□□□□□ -0.32
VPS54-203ENST00000409558 SYTL3Q4VX76 610 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 LY6G5CQ5SRR4 150 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 MAL2Q969L2 176 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 ACPTQ9BZG2 426 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 P2RY12Q9H244 342 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 CXorf21Q9HAI6 301 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 FANCEQ9HB96 536 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 PHF24Q9UPV7 400 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 DMTF1Q9Y222 760 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 PCDHB14Q9Y5E9 798 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 CEPT1Q9Y6K0 416 aa13.08□□□□□ -0.32
VPS54-203ENST00000409558 AQP12BA6NM10 295 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 MANBAO00462 879 aa13.07□□□□□ -0.32
VPS54-203ENST00000409558 VPS4BO75351 444 aa13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms