RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 NAA25Q14CX7 972 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 SLC9B1Q4ZJI4 515 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 PYCR3Q53H96 274 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 VWA5B1Q5TIE3 1220 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 PTRHD1Q6GMV3 140 aaKnown RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 CRTC3Q6UUV7 619 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 GALNT13Q8IUC8 556 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 TRAPPC5Q8IUR0 188 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 ZNF547Q8IVP9 402 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 SCUBE1Q8IWY4 988 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 BEND7Q8N7W2 519 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 PDXPQ96GD0 296 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 CAAP1Q9H8G2 361 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 CARS2Q9HA77 564 aaKnown RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 MRGBPQ9NV56 204 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 C15orf41Q9Y2V0 281 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 GPR179Q6PRD1 2367 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 KNL1Q8NG31 2342 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 GOLGA8QA0A0J9YX86 632 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 GOLGA8OA6NCC3 632 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 GOLGA8NF8WBI6 632 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 ARHGAP33O14559 1287 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 POP7O75817 140 aaKnown RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 RASGRP1O95267 797 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 ESR1P03372 595 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 CSF2P04141 144 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 OR56A5P0C7T3 313 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 JUNDP17535 347 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 GNAZP19086 355 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 NCF2P19878 526 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 RPS3P23396 243 aaKnown RBP eCLIP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 CPOXP36551 454 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 BLKP51451 505 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 PGGT1BP53609 377 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 GRIK2Q13002 908 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 HLA-BQ31612 363 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 TRMT5Q32P41 509 aaKnown RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 ZNF549Q6P9A3 640 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 LRRTM4Q86VH4 590 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 CPSF7Q8N684 471 aaKnown RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 MAPK15Q8TD08 544 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 TRMOQ9BU70 441 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 NUSAP1Q9BXS6 441 aaKnown RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 TCEAL2Q9H3H9 227 aaPredicted RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 EML4Q9HC35 981 aaKnown RBP13.13□□□□□ -0.31
LIMS1-204ENST00000409441 TM7SF3Q9NS93 570 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 ZDHHC2Q9UIJ5 367 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 CDYLQ9Y232 598 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 PCDHB1Q9Y5F3 818 aa13.13□□□□□ -0.31
LIMS1-204ENST00000409441 TNRC6BQ9UPQ9 1833 aaKnown RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 TRPC5OSA6NMA1 111 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 A8MT66 165 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 IQCF5A8MTL0 148 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 KMOO15229 486 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 ENTPD5O75356 428 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 IPO13O94829 963 aaKnown RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 SYPP08247 313 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 PKMP14618 531 aaKnown RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 NME1P15531 152 aaKnown RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 GCKP35557 465 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 NFKB2Q00653 900 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 KLF10Q13118 480 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 KPNB1Q14974 876 aaKnown RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 BCL7AQ4VC05 210 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 CTSL3PQ5NE16 218 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 TCEAL6Q6IPX3 200 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 IL27RAQ6UWB1 636 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 CHST15Q7LFX5 561 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 ULK2Q8IYT8 1036 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 PHACTR4Q8IZ21 702 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 CCNYL1Q8N7R7 359 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 TCEAL3Q969E4 200 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 ELF4Q99607 663 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 CCM2Q9BSQ5 444 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 AARSD1Q9BTE6 412 aaKnown RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 ZDHHC5Q9C0B5 715 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 TMEM168Q9H0V1 697 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 CCDC68Q9H2F9 335 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 NKX1-2Q9UD57 310 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 SLC23A2Q9UGH3 650 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 GNPTGQ9UJJ9 305 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 PLEKHM1Q9Y4G2 1056 aa13.12□□□□□ -0.31
LIMS1-204ENST00000409441 DNMT3AQ9Y6K1 912 aaPredicted RBP13.12□□□□□ -0.31
LIMS1-204ENST00000409441 PLXNB3Q9ULL4 1909 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 PROB1E7EW31 1015 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 H3BMM5 538 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 QSOX1O00391 747 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 TRIM16O95361 564 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 PSMG1O95456 288 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 ZNF806P0C7X5 589 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 COX4I1P13073 169 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 CTSEP14091 401 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 ITGB6P18564 788 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 CHRM3P20309 590 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 RXRGP48443 463 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 ARRB1P49407 418 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-204ENST00000409441 PRLHRP49683 370 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 GTF2A1P52655 376 aaPredicted RBP13.11□□□□□ -0.31
LIMS1-204ENST00000409441 CDKN2DP55273 166 aa13.11□□□□□ -0.31
LIMS1-204ENST00000409441 SPEM2Q0P670 501 aa13.11□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms