RNA–Protein interactions for RNA: ENST00000398452.6

SKA1-202, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SKA1, Length 979 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-202ENST00000398452 VIMP08670 466 aaKnown RBP13.86□□□□□ -0.19
SKA1-202ENST00000398452 NME1P15531 152 aaKnown RBP13.86□□□□□ -0.19
SKA1-202ENST00000398452 NDUFS1P28331 727 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 HNMTP50135 292 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 ALDH18A1P54886 795 aaKnown RBP13.86□□□□□ -0.19
SKA1-202ENST00000398452 CDKL1Q00532 357 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 SPEM2Q0P670 501 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 STX3Q13277 289 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 PCLAFQ15004 111 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 TCEA2Q15560 299 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 DUOXA1Q1HG43 343 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 PRRT3Q5FWE3 981 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 CDKL4Q5MAI5 379 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 TTC19Q6DKK2 380 aaPredicted RBP13.86□□□□□ -0.19
SKA1-202ENST00000398452 LAYNQ6UX15 382 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 THSD4Q6ZMP0 1018 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 FAM83HQ6ZRV2 1179 aaPredicted RBP13.86□□□□□ -0.19
SKA1-202ENST00000398452 DCUN1D3Q8IWE4 304 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 SDR16C5Q8N3Y7 309 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 CCNYL1Q8N7R7 359 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 AVL9Q8NBF6 648 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 PHC3Q8NDX5 983 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 LMX1AQ8TE12 382 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 CXorf40BQ96DE9 158 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 CCDC138Q96M89 665 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 FERD3LQ96RJ6 166 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 MECRQ9BV79 373 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 NSRP1Q9H0G5 558 aaKnown RBP13.86□□□□□ -0.19
SKA1-202ENST00000398452 OR52A5Q9H2C5 316 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 OXSMQ9NWU1 459 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 POLG2Q9UHN1 485 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 LNPEPQ9UIQ6 1025 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 GMEB2Q9UKD1 530 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 PILRBQ9UKJ0 227 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 ADAM21Q9UKJ8 722 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 ADAMTS6Q9UKP5 1117 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 PLEKHM1Q9Y4G2 1056 aa13.86□□□□□ -0.19
SKA1-202ENST00000398452 PCYT1BQ9Y5K3 369 aaPredicted RBP13.86□□□□□ -0.19
SKA1-202ENST00000398452 A0A1B0GVT2 93 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 A8MT66 165 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 STX16-NPEPL1H3BU86 382 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 GFYI3L273 518 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 STX16O14662 325 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 DLX3O60479 287 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 BGNP21810 368 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 AK4P27144 223 aaPredicted RBP13.85□□□□□ -0.19
SKA1-202ENST00000398452 DNAJB13P59910 316 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 NFKB2Q00653 900 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 ANKS6Q68DC2 871 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 IL27RAQ6UWB1 636 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 SBSNQ6UWP8 590 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 WASH2PQ6VEQ5 465 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 TBC1D21Q8IYX1 336 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 C1orf216Q8TAB5 229 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 GPBAR1Q8TDU6 330 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 MVB12BQ9H7P6 319 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 ERVMER34-1Q9H9K5 563 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 EML4Q9HC35 981 aaKnown RBP13.85□□□□□ -0.19
SKA1-202ENST00000398452 WASH6PQ9NQA3 447 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 SIRPGQ9P1W8 387 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 GULP1Q9UBP9 304 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 PDE10AQ9Y233 779 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 TDRKHQ9Y2W6 561 aaKnown RBP13.85□□□□□ -0.19
SKA1-202ENST00000398452 SLCO1B1Q9Y6L6 691 aa13.85□□□□□ -0.19
SKA1-202ENST00000398452 THADAQ6YHU6 1953 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 NEMP2A6NFY4 417 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 TMEM114B3SHH9 223 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 TARM1B6A8C7 271 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 YKT6O15498 198 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 DFNA5O60443 496 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 SUPT7LO94864 414 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 SNUPNO95149 360 aaKnown RBP13.84□□□□□ -0.19
SKA1-202ENST00000398452 C1orf105O95561 183 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 HSPA4LO95757 839 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 ANXA6P08133 673 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 SYPP08247 313 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 F3P13726 295 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 IMPDH1P20839 514 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 SERPINB5P36952 375 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 HSD17B2P37059 387 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 ARL1P40616 181 aaPredicted RBP13.84□□□□□ -0.19
SKA1-202ENST00000398452 BDKRB1P46663 353 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 PIK3CGP48736 1102 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 C1orf61Q13536 156 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 ZNF658BQ4V348 819 aaPredicted RBP13.84□□□□□ -0.19
SKA1-202ENST00000398452 ABRAXAS1Q6UWZ7 409 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 SPATS2Q86XZ4 545 aaKnown RBP13.84□□□□□ -0.19
SKA1-202ENST00000398452 KIRREL3Q8IZU9 778 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 AFAP1L2Q8N4X5 818 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 PDPRQ8NCN5 879 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 FBXO15Q8NCQ5 510 aaPredicted RBP13.84□□□□□ -0.19
SKA1-202ENST00000398452 FAM46DQ8NEK8 389 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 OR9A1PQ8NGU1 263 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 ZNF75CPQ92670 426 aaPredicted RBP13.84□□□□□ -0.19
SKA1-202ENST00000398452 WNT2BQ93097 391 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 LOXL4Q96JB6 756 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 RMDN2Q96LZ7 410 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 RAB11FIP5Q9BXF6 653 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 PRDM8Q9NQV8 689 aa13.84□□□□□ -0.19
SKA1-202ENST00000398452 TAAR2Q9P1P5 351 aa13.84□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 80.5 ms