RNA–Protein interactions for RNA: ENST00000389040.9

VPS53-202, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best)

Gene VPS53, Length 1,903 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-202ENST00000389040 TMEM202A6NGA9 273 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 NUAK1O60285 661 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 AP2A2O94973 939 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 TPBGLP0DKB5 382 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 CD1DP15813 335 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 JUNDP17535 347 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 EPHA3P29320 983 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 TTPAP49638 278 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 CLCNKAP51800 687 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 TIAL1Q01085 375 aaKnown RBP eCLIP9.98□□□□□ -0.81
VPS53-202ENST00000389040 TMEM115Q12893 351 aaPredicted RBP9.98□□□□□ -0.81
VPS53-202ENST00000389040 KLF10Q13118 480 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 EIF2B5Q13144 721 aaKnown RBP9.98□□□□□ -0.81
VPS53-202ENST00000389040 GTF2H3Q13889 308 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 LSM12Q3MHD2 195 aaKnown RBP9.98□□□□□ -0.81
VPS53-202ENST00000389040 ACSBG2Q5FVE4 666 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 SH2D4BQ5SQS7 431 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 NET1Q7Z628 596 aaPredicted RBP9.98□□□□□ -0.81
VPS53-202ENST00000389040 ISCA2Q86U28 154 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 NXPE1Q8N323 547 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 SAP25Q8TEE9 199 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 WDR60Q8WVS4 1066 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 DCUN1D1Q96GG9 259 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 PPP1R36Q96LQ0 422 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 COPS8Q99627 209 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 AARSD1Q9BTE6 412 aaKnown RBP9.98□□□□□ -0.81
VPS53-202ENST00000389040 THTPAQ9BU02 230 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 CCDC28BQ9BUN5 200 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 GTPBP2Q9BX10 602 aaKnown RBP9.98□□□□□ -0.81
VPS53-202ENST00000389040 EML4Q9HC35 981 aaKnown RBP9.98□□□□□ -0.81
VPS53-202ENST00000389040 TM7SF3Q9NS93 570 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 CRLS1Q9UJA2 301 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 C15orf41Q9Y2V0 281 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 DMDP11532 3685 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 SPAG17Q6Q759 2223 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 GPR179Q6PRD1 2367 aa9.98□□□□□ -0.81
VPS53-202ENST00000389040 TRPC5OSA6NMA1 111 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 TMEM233B4DJY2 109 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 H0Y3Z8 333 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 SCAMP1O15126 338 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 KMOO15229 486 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 SLC22A2O15244 555 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 FLRT2O43155 660 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 CIB2O75838 187 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 PIAS2O75928 621 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 CDK14O94921 469 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 JUNP05412 331 aaKnown RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 PRSS56P0CW18 603 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ALPPL2P10696 532 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 COX4I1P13073 169 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 CTSEP14091 401 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ZNF37AP17032 561 aaPredicted RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 VCLP18206 1134 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 GNAZP19086 355 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ACRV1P26436 265 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 EPHA8P29322 1005 aaPredicted RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 NSG1P42857 185 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 GRK6P43250 576 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ADARP55265 1226 aaKnown RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 SLC25A3Q00325 362 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 CCDC6Q16204 474 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 PDCD2Q16342 344 aaPredicted RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 ALG11Q2TAA5 492 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 GPRC6AQ5T6X5 926 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 TCEAL6Q6IPX3 200 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 GKN2Q86XP6 184 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 PHACTR4Q8IZ21 702 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 PELI3Q8N2H9 469 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 CFAP61Q8NHU2 1237 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 LPGAT1Q92604 370 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 TCEAL3Q969E4 200 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 CLPTM1LQ96KA5 538 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ZDHHC3Q9NYG2 299 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 APOBEC3BQ9UH17 382 aaKnown RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 OTOGLQ3ZCN5 2332 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ANKRD36A6QL64 1941 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 UBA6A0AVT1 1052 aaPredicted RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 GOLGA8CPA6NN73 597 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 LMO7DNF2Z398 122 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 INPP4BO15327 924 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 MSH3P20585 1137 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 IMPDH1P20839 514 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 DGKAP23743 735 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 CCNG1P51959 295 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 NFKB2Q00653 900 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 GALNT1Q10472 559 aaPredicted RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 ILF3Q12906 894 aaKnown RBP eCLIP9.97□□□□□ -0.81
VPS53-202ENST00000389040 TRMT5Q32P41 509 aaKnown RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 PYCR3Q53H96 274 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ZRANB3Q5FWF4 1079 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 C6orf163Q5TEZ5 329 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 STPG1Q5TH74 334 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 LAYNQ6UX15 382 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 FRMD7Q6ZUT3 714 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 ADGRG6Q86SQ4 1221 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 GALNT13Q8IUC8 556 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 HID1Q8IV36 788 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 AFAP1L2Q8N4X5 818 aa9.97□□□□□ -0.81
VPS53-202ENST00000389040 CPSF7Q8N684 471 aaKnown RBP9.97□□□□□ -0.81
VPS53-202ENST00000389040 GPBAR1Q8TDU6 330 aa9.97□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms